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MN908688.1__QIG58385.1__SEA_CORNIE_7__00007

Bact-Vir

MN908688.1__QIG58385.1__SEA_CORNIE_7__00007

Identity

Accession:
MN908688 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cornievirus› Mycobacterium_phage_Cornie

TaxID: 2704043

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 45-95
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5tkyA05 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.79 56.0 4.62e-01 74.5% 69.0%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.74 59.0 5.80e-01 86.3% 80.0%
4zbwA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.72 55.0 4.67e-01 84.3% 78.2%
2bbrA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.71 54.0 4.39e-01 84.3% 55.0%
3d8lA00 1.10.8.940 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 0.63 50.0 4.26e-01 92.2% 85.7%
1khcA02 1.10.720.50 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › PWWP, helical domain 0.59 45.0 4.21e-01 88.2% 94.2%
2pgsA02 1.10.3550.10 Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › eoxyguanosinetriphosphate triphosphohydrolase domain-like 0.58 42.0 3.32e-01 80.4% 75.6%
3fmtE01 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.58 38.0 4.04e-01 78.4% 82.9%
4r0zA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.57 48.0 2.77e-01 100.0% 22.6%
4btfA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 41.0 2.79e-01 78.4% 28.9%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.56 43.0 3.58e-01 86.3% 88.3%
4iejA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 39.0 3.48e-01 94.1% 52.0%
1dp3A00 1.10.10.450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TraM protein, DNA-binding 0.52 34.0 3.39e-01 78.4% 63.6%
3imkA00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 43.0 3.10e-01 96.1% 79.7%
4gbmA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 2.60e-01 90.2% 81.6%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4207785 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.83 64.0 3.62e-01 86.3% 8.5%
4282729 130.1.1.45 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PF29669 0.78 62.0 5.03e-01 88.2% 90.5%
3190964 130.1.1.20 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › HeH 0.77 58.0 5.67e-01 88.2% 74.5%
3797432 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.77 63.0 6.23e-01 88.2% 94.3%
None — 0.77 63.0 3.72e-01 90.2% 12.4%
3191312 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.75 55.0 5.79e-01 88.2% 88.9%
3668516 314.1.1.1 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 0.75 62.0 3.65e-01 90.2% 12.3%
4113879 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.75 54.0 3.33e-01 76.5% 15.2%
4957579 1049.2.1.0 ↗ alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain 0.74 54.0 4.63e-01 88.2% 48.2%
3993846 314.1.1.1 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 0.74 60.0 3.56e-01 90.2% 12.3%
3881355 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.72 60.0 6.09e-01 92.2% 98.0%
3191284 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.72 54.0 5.45e-01 88.2% 82.0%
4545934 130.1.1.29 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SLS1_N 0.72 60.0 5.45e-01 94.1% 92.9%
3714674 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.70 58.0 5.72e-01 94.1% 98.2%
3390715 130.1.1.10 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP30_Sin3_bdg 0.69 48.0 5.14e-01 86.3% 95.0%
4989195 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.67 61.0 4.62e-01 100.0% 62.6%
3670753 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.66 47.0 3.13e-01 90.2% 17.3%
3650342 130.1.1.10 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP30_Sin3_bdg 0.64 45.0 4.55e-01 84.3% 76.0%
3666608 130.1.1.10 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP30_Sin3_bdg 0.61 51.0 4.91e-01 98.0% 91.7%
3801118 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 46.0 4.34e-01 84.3% 78.5%
3221336 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.60 50.0 3.30e-01 94.1% 53.1%
3828982 7510.1.1.0 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like 0.60 45.0 3.26e-01 82.4% 92.9%
3591782 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 45.0 4.40e-01 94.1% 88.3%
5009805 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.57 34.0 2.61e-01 86.3% 24.0%
3631890 298.3.1.2 ↗ a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter 0.57 47.0 3.42e-01 100.0% 46.1%
2740248 109.4.1.208 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Clathrin_H_link 0.56 47.0 3.19e-01 100.0% 43.5%
4113660 101.1.2.536 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.54 40.0 4.08e-01 100.0% 84.0%
5060128 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 40.0 3.72e-01 98.0% 64.6%
3893171 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.53 39.0 3.75e-01 100.0% 70.0%
5083964 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 37.0 3.08e-01 76.5% 83.0%
3517408 101.1.1.123 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MCRS_N 0.52 37.0 3.23e-01 90.2% 47.1%
4027961 103.8.1.1 ↗ alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain › SBDS_domain_II 0.52 40.0 3.63e-01 84.3% 64.3%
4954640 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.52 41.0 2.84e-01 92.2% 34.3%
3839704 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.51 40.0 2.93e-01 98.0% 59.5%
3922607 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 41.0 3.46e-01 96.1% 84.2%