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MN908688.1QIG58477.1SEA_CORNIE_14__00013

Bact-Vir

MN908688.1__QIG58477.1__SEA_CORNIE_14__00013

Identity

Accession:: MN908688 ↗
Kingdom:: phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cornievirus› Mycobacterium_phage_Cornie

TaxID: 2704043

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-58_130-166

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6z3tA01	1.10.3370.10	Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain	0.61	54.0	3.52e-01	100.0%	63.7%
3zqmA00	6.10.140.2160	Special › Helix non-globular › Helix Hairpins ›	0.58	36.0	4.04e-01	78.8%	83.1%
4zudA01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.56	51.0	3.56e-01	100.0%	64.8%
4h7nA01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.56	38.0	2.62e-01	70.0%	34.8%
2czrA02	3.90.79.30	Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain	0.56	39.0	3.45e-01	73.8%	77.5%
2lboA00	3.90.640.70	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 ›	0.53	39.0	3.50e-01	82.5%	87.0%
1vwxr00	3.30.390.110	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 ›	0.51	40.0	3.53e-01	87.5%	58.4%
1vehA01	3.30.300.130	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA)	0.51	38.0	3.96e-01	82.5%	86.7%

ECOD (19)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3262355	263.1.1.1 ↗	a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF	0.71	34.0	3.24e-01	75.0%	39.8%
4977680	5061.1.1.0 ↗	alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit	0.69	55.0	3.39e-01	87.5%	41.5%
4301522	7519.1.1.1 ↗	a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt	0.68	47.0	3.27e-01	71.2%	65.8%
4968705	5061.1.1.0 ↗	alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit	0.68	54.0	3.30e-01	87.5%	40.6%
4975221	5061.1.1.1 ↗	alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY	0.59	52.0	3.26e-01	100.0%	56.2%
3213226	3075.1.1.0 ↗	a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA	0.58	44.0	4.71e-01	92.5%	100.0%
3236426	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.58	51.0	3.38e-01	100.0%	57.4%
3877843	3075.1.1.2 ↗	a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › UPF0561	0.57	43.0	4.63e-01	87.5%	100.0%
3711095	3075.1.1.0 ↗	a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA	0.57	45.0	4.65e-01	92.5%	92.0%
5078624	878.1.1.1 ↗	a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194	0.57	47.0	4.35e-01	92.5%	81.0%
3997689	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.55	49.0	3.23e-01	98.8%	25.5%
3234667	5001.1.1.41 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw	0.55	49.0	3.25e-01	100.0%	64.5%
4657002	2003.1.5.152 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS, Methyltransf_25	0.53	44.0	3.08e-01	96.2%	84.7%
3608514	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.53	46.0	3.50e-01	100.0%	90.0%
None	—		0.52	41.0	2.60e-01	88.7%	72.2%
4645961	102.2.1.3 ↗	alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N	0.52	41.0	3.13e-01	85.0%	62.6%
3194847	3343.1.1.2 ↗	alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal	0.51	45.0	2.67e-01	100.0%	50.1%
3253762	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.50	39.0	3.98e-01	85.0%	85.0%
3989430	3755.3.1.127 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N	0.50	41.0	3.37e-01	87.5%	60.0%

D2 medium residues 59-129

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2w3sB04	3.30.365.10	Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain	0.55	39.0	2.85e-01	74.6%	52.7%
1bd3A00	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.50	45.0	3.17e-01	100.0%	45.1%
1f02T00	4.10.820.10	Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain	0.50	40.0	4.12e-01	98.6%	97.0%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4466251	377.12.1.1 ↗	few secondary structure elements › Glucocorticoid receptor-like › RPL34 › RPL34 › Ribosomal_L34e	0.67	26.0	2.31e-01	74.6%	25.0%
4927073	101.1.2.136 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_20	0.53	37.0	2.78e-01	93.0%	29.7%
3932006	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.52	45.0	3.88e-01	98.6%	76.5%
4929803	101.1.2.14 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_5	0.52	38.0	2.87e-01	100.0%	31.0%
3695594	2484.1.1.176 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2	0.52	42.0	2.61e-01	95.8%	85.7%
3712474	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.50	34.0	2.90e-01	100.0%	40.8%

D3 medium residues 167-223

PDB

Domain cluster: rep: NC_047904.1__YP_009796735.1__HOS57_gp13__00013__D88-144

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4rayA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.62	43.0	3.79e-01	73.7%	94.1%
2mphA01	1.10.720.80	Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 ›	0.61	48.0	4.31e-01	91.2%	69.0%
2lc3A00	1.10.720.80	Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 ›	0.61	50.0	4.45e-01	96.5%	71.6%
6dx5A00	3.90.70.80	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A ›	0.58	44.0	3.24e-01	86.0%	56.2%
4gxbA02	1.20.80.60	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.57	45.0	4.47e-01	94.7%	85.5%
2hs5A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.56	38.0	3.60e-01	70.2%	71.6%
2mh3A00	4.10.280.10	Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain	0.55	40.0	3.83e-01	87.7%	65.7%
4uz0A00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.54	44.0	3.99e-01	100.0%	74.7%
4c5fA02	1.10.530.10	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.53	43.0	3.27e-01	100.0%	34.5%
3tqsA02	1.10.8.100	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain	0.53	39.0	3.82e-01	84.2%	84.6%
5nj8A01	4.10.280.10	Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain	0.52	36.0	3.73e-01	87.7%	80.8%
1zc6A02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.52	42.0	3.23e-01	100.0%	48.7%
2fjrA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.51	38.0	3.56e-01	86.0%	64.5%
1qyrA02	1.10.8.100	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain	0.51	39.0	3.84e-01	94.7%	85.3%
2r1jL00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.50	40.0	3.91e-01	96.5%	83.3%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4378615	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.61	36.0	3.66e-01	82.5%	58.2%
5001435	103.5.1.0 ↗	alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like	0.57	45.0	4.42e-01	91.2%	89.2%
4587778	101.1.2.25 ↗	alpha arrays › HTH › HTH › winged helix domain › FUR	0.56	40.0	3.22e-01	78.9%	94.4%
4963279	101.1.4.92 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF5791	0.54	44.0	4.24e-01	100.0%	82.6%
5058156	314.1.1.9 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His	0.51	43.0	2.78e-01	100.0%	98.4%