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MN908691.1__QIG58820.1__SEA_DATBOI_156__00154

Bact-Vir

MN908691.1__QIG58820.1__SEA_DATBOI_156__00154

Identity

Accession:
MN908691 ↗
Kingdom:
phage

Quality

71.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bantamvirus› Gordonia_phage_DatBoi

TaxID: 2704037

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-53
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.79 57.0 4.95e-01 75.5% 53.2%
2ba0A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 55.0 4.60e-01 75.5% 97.7%
2wzpR01 2.30.300.20 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Phage tail base-plate attachment protein, domain D1/D2 0.70 50.0 3.38e-01 75.5% 60.2%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.67 47.0 3.81e-01 73.6% 50.0%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.67 52.0 4.36e-01 92.5% 50.0%
2o3gA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.66 42.0 3.78e-01 71.7% 46.1%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.00e-01 75.5% 57.8%
2oaiA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.65 43.0 3.82e-01 71.7% 45.0%
1yy3A02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.63 53.0 4.37e-01 96.2% 63.6%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 3.77e-01 71.7% 64.6%
2gcuA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 42.0 2.77e-01 77.4% 19.0%
1vwxo00 3.10.450.80 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 40.0 3.24e-01 73.6% 72.1%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 41.0 2.83e-01 81.1% 86.2%
3mcaB01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.56 41.0 3.49e-01 83.0% 51.0%
1uyjA01 3.30.360.60 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › 0.55 40.0 3.51e-01 79.2% 69.5%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.54 39.0 3.16e-01 81.1% 45.7%
2sliA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 3.09e-01 100.0% 53.1%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.72e-01 94.3% 27.6%
6baoA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 37.0 2.86e-01 75.5% 62.9%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 42.0 3.25e-01 94.3% 75.9%
3htrA00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.53 43.0 3.50e-01 88.7% 77.6%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.52 37.0 3.28e-01 81.1% 55.4%
6bu2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 40.0 3.01e-01 86.8% 52.0%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 35.0 2.91e-01 71.7% 63.1%
1auuA00 2.30.24.10 Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain 0.51 36.0 3.62e-01 77.4% 98.2%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.51 38.0 3.62e-01 84.9% 78.5%
3id9B00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 42.0 3.26e-01 96.2% 69.8%
3r2uB01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 36.0 2.42e-01 81.1% 20.2%
8gj8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 38.0 2.67e-01 96.2% 98.4%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.79 55.0 3.33e-01 73.6% 20.3%
3170649 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 53.0 4.52e-01 75.5% 63.5%
4991056 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.73 48.0 4.74e-01 71.7% 65.5%
4000403 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.70 46.0 4.70e-01 71.7% 70.0%
4618103 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 51.0 4.89e-01 84.9% 68.3%
3297164 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.63 47.0 3.77e-01 83.0% 50.0%
5061894 1.1.12.0 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins 0.62 49.0 4.11e-01 90.6% 55.0%
3496522 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 46.0 2.69e-01 81.1% 19.2%
4346748 1.1.12.1 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.61 53.0 3.95e-01 96.2% 46.9%
5073026 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 41.0 4.25e-01 71.7% 78.0%
4271107 1.1.12.1 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.57 49.0 3.86e-01 96.2% 56.5%
3778889 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.56 42.0 3.26e-01 88.7% 57.9%
4932472 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 38.0 3.27e-01 84.9% 42.1%
3679931 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.55 40.0 2.81e-01 84.9% 41.4%
3938575 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.55 38.0 3.08e-01 71.7% 41.9%
3417283 7516.1.1.16 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_43 0.55 41.0 2.79e-01 96.2% 65.2%
3642904 246.3.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.55 39.0 2.60e-01 79.2% 16.1%
3513627 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.55 38.0 2.40e-01 77.4% 17.1%
4976230 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.04e-01 71.7% 39.1%
4369177 391.1.2.3 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.54 40.0 3.54e-01 84.9% 80.7%
3504386 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.54 41.0 3.82e-01 84.9% 92.9%
4021124 5.1.5.88 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nucleoporin_N 0.54 38.0 2.26e-01 79.2% 79.6%
3623943 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.54 38.0 3.55e-01 81.1% 80.0%
4000391 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 38.0 2.45e-01 79.2% 17.7%
4961746 304.8.1.122 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DmsR_N 0.53 41.0 3.30e-01 88.7% 73.0%
3407018 391.1.2.11 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_2nd 0.53 40.0 3.89e-01 84.9% 83.3%
3214385 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.53 37.0 3.54e-01 81.1% 87.1%
2391089 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.52 36.0 3.28e-01 75.5% 63.3%
3859372 9.13.1.0 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.51 35.0 2.94e-01 73.6% 57.1%
3789481 239.3.1.0 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.51 34.0 2.56e-01 71.7% 26.7%
3770082 2.1.1.52 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.51 39.0 2.85e-01 90.6% 71.7%
3720361 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.51 40.0 2.40e-01 94.3% 17.1%
4946325 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 35.0 2.94e-01 75.5% 40.0%
3727780 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.51 38.0 2.54e-01 96.2% 37.8%
3277064 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 35.0 2.60e-01 77.4% 35.3%