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MN908694.1__QIG59054.1__SEA_RUBYRALPH_46__00046

Bact-Vir

MN908694.1__QIG59054.1__SEA_RUBYRALPH_46__00046

Identity

Accession:
MN908694 ↗
Kingdom:
phage

Quality

85.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-137
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01551.30 best Peptidase_M23 40.5 3.50e-10 81.9% 90.6%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hsiB02 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.93 76.0 7.18e-01 100.0% 73.3%
1qwyA02 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.90 80.0 7.09e-01 99.2% 68.6%
4bh5A00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.89 77.0 7.65e-01 99.2% 86.9%
7qrlA01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.86 75.0 7.39e-01 96.9% 85.9%
6jn7A01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.85 76.0 6.69e-01 100.0% 67.4%
2gu1A03 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.85 77.0 7.61e-01 100.0% 90.2%
4rnyA03 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.83 74.0 7.38e-01 100.0% 91.4%
3tufB00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.79 75.0 6.91e-01 100.0% 83.5%
3csqA02 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.76 72.0 6.51e-01 100.0% 89.6%
5b0hA00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.75 67.0 6.61e-01 98.4% 89.5%
3it5G00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.73 68.0 5.95e-01 100.0% 70.0%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 30.0 3.94e-01 93.7% 83.3%
6gh3A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.58 49.0 3.64e-01 91.3% 58.3%
1p49A03 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 36.0 3.87e-01 74.0% 74.1%
5cenA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 28.0 3.44e-01 94.5% 74.4%
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.54 46.0 4.34e-01 92.1% 93.0%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.54 45.0 3.58e-01 89.8% 59.6%
3i1aA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 30.0 3.28e-01 97.6% 67.0%
4ktpA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.52 43.0 3.45e-01 89.8% 48.4%
3h0gH00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.85e-01 77.2% 86.3%
3stoA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 38.0 3.64e-01 79.5% 85.6%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3290826 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.92 79.0 7.07e-01 100.0% 68.3%
3590598 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.92 82.0 8.06e-01 100.0% 88.0%
3984086 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.90 77.0 6.48e-01 98.4% 57.4%
4379172 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.90 76.0 7.48e-01 100.0% 83.5%
4371098 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.89 74.0 7.60e-01 100.0% 90.0%
3056400 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.89 77.0 7.64e-01 99.2% 86.3%
3965283 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.89 76.0 7.71e-01 99.2% 90.2%
3966112 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.87 79.0 6.89e-01 100.0% 67.4%
4416013 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.87 81.0 7.35e-01 100.0% 76.2%
3974471 325.1.6.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif 0.87 78.0 7.66e-01 100.0% 87.4%
3279250 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.87 80.0 7.73e-01 100.0% 87.1%
4471307 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.87 79.0 7.50e-01 100.0% 83.3%
4032307 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.86 81.0 7.77e-01 100.0% 88.6%
1513000 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.86 74.0 6.54e-01 100.0% 65.3%
1394279 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.86 82.0 7.45e-01 100.0% 82.6%
2573963 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.85 76.0 6.54e-01 100.0% 63.4%
4034361 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.85 76.0 7.46e-01 100.0% 87.4%
1891424 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.85 72.0 7.42e-01 93.7% 91.8%
2663449 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.85 75.0 7.51e-01 100.0% 90.8%
None 0.84 77.0 7.50e-01 100.0% 88.9%
2774289 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.84 77.0 6.93e-01 100.0% 73.6%
3385726 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.84 77.0 6.25e-01 100.0% 55.5%
3386468 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.84 78.0 7.01e-01 100.0% 74.5%
3957060 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.83 70.0 6.70e-01 100.0% 77.2%
4999158 325.1.6.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif 0.83 79.0 6.30e-01 100.0% 71.3%
2774531 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.82 78.0 7.00e-01 100.0% 88.2%
3388302 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.82 71.0 7.17e-01 99.2% 90.4%
3966987 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.82 78.0 7.03e-01 100.0% 82.3%
5073481 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.81 77.0 6.25e-01 100.0% 89.5%
5018327 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.81 77.0 6.79e-01 100.0% 93.1%
5034238 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.81 77.0 6.69e-01 100.0% 90.0%
1907311 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.80 76.0 7.20e-01 100.0% 89.1%
4941596 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.80 76.0 6.68e-01 100.0% 86.3%
216296 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.79 75.0 6.91e-01 100.0% 83.5%
3283166 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.78 69.0 5.28e-01 100.0% 44.1%
5079376 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.76 72.0 6.35e-01 100.0% 76.4%
3578525 325.1.6.6 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PF26730 0.76 72.0 6.60e-01 100.0% 83.7%
1173319 325.1.6.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif 0.76 72.0 6.54e-01 100.0% 90.7%
1877223 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.76 68.0 6.67e-01 98.4% 89.5%
3229193 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.76 71.0 6.61e-01 100.0% 89.7%
5078228 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.75 71.0 6.47e-01 100.0% 83.7%
3895927 325.1.6.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif 0.75 67.0 6.59e-01 98.4% 88.9%
4658045 325.1.6.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif 0.73 69.0 5.72e-01 100.0% 61.4%
119413 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.73 68.0 5.94e-01 100.0% 69.2%
4563644 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.73 69.0 6.03e-01 100.0% 71.3%
None 0.63 58.0 5.15e-01 100.0% 93.7%
6337 331.14.1.1 a+b two layers › TBP-like › RalF, C-terminal domain › RalF, C-terminal domain › RalF_SCD 0.54 46.0 4.34e-01 92.1% 93.0%
D2 high residues 158-229
PDB
D3 high residues 347-525
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01510.31 best Amidase_2 41.5 2.30e-10 71.5% 97.7%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aroL00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.80 62.0 6.75e-01 87.7% 94.6%
1yb0B00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.79 68.0 7.21e-01 96.1% 100.0%
2y28B00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.79 73.0 7.40e-01 95.0% 98.9%
6su5A01 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.78 64.0 6.98e-01 91.1% 100.0%
2eaxA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.78 67.0 7.07e-01 91.6% 98.2%
3latA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.77 72.0 6.79e-01 96.6% 84.5%
5xz3B00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.77 68.0 7.02e-01 92.2% 97.0%
2rkqA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.77 68.0 6.98e-01 91.6% 96.4%
4olsA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.77 70.0 6.96e-01 95.5% 100.0%
1ohtA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.77 67.0 6.85e-01 91.1% 93.6%
2xz4A00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.74 64.0 6.72e-01 90.5% 97.6%
4ivvA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.74 67.0 6.87e-01 95.5% 100.0%
3ep1A00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.72 64.0 6.60e-01 91.6% 98.8%
2xz8A00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.72 53.0 6.04e-01 84.9% 100.0%
2i71A01 3.40.50.10640 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like 0.65 41.0 3.79e-01 81.6% 49.8%
5mifA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 44.0 3.70e-01 96.6% 41.4%
2ixdA00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.62 40.0 3.67e-01 87.7% 49.1%
3gxhA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.61 33.0 3.57e-01 83.8% 59.6%
1u6zA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 33.0 3.92e-01 77.7% 81.7%
3q71A00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.54 41.0 3.97e-01 87.2% 69.0%
4i0wB01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.53 38.0 3.17e-01 74.3% 74.9%
5nthA01 3.40.50.10590 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Zn-dependent exopeptidases 0.53 36.0 3.59e-01 81.0% 65.1%
5ntfA01 3.40.50.10590 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Zn-dependent exopeptidases 0.51 38.0 3.82e-01 87.2% 76.8%
3iiiA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 42.0 3.61e-01 89.4% 58.0%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2774594 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.87 69.0 7.55e-01 93.3% 96.7%
2845647 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.82 66.0 7.16e-01 93.9% 96.7%
2445367 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.81 62.0 6.71e-01 88.8% 90.4%
4088805 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.81 68.0 6.77e-01 89.9% 84.3%
1900462 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.80 62.0 6.75e-01 87.7% 94.6%
3967132 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.80 73.0 7.31e-01 93.9% 96.7%
3278570 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.79 72.0 7.27e-01 94.4% 97.8%
4265814 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.79 70.0 7.37e-01 91.6% 100.0%
4650125 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.79 73.0 7.38e-01 95.5% 100.0%
3957313 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.78 73.0 6.96e-01 97.2% 98.0%
4291672 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.78 69.0 7.17e-01 91.6% 98.2%
3897241 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.78 68.0 7.18e-01 91.1% 100.0%
3767503 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.78 69.0 7.02e-01 92.2% 94.8%
1902112 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.77 72.0 6.79e-01 96.6% 84.5%
4031908 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.77 71.0 6.97e-01 96.1% 97.4%
1903375 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.77 68.0 6.98e-01 91.6% 96.4%
3416111 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.77 67.0 6.96e-01 91.6% 95.9%
3389811 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.76 67.0 6.78e-01 91.1% 92.6%
2494148 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.76 66.0 6.73e-01 91.1% 92.0%
3587007 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.76 69.0 7.00e-01 95.0% 96.6%
3910569 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.75 67.0 6.64e-01 92.7% 92.4%
4429159 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.75 68.0 5.07e-01 94.4% 74.4%
3401062 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.75 66.0 6.83e-01 92.2% 98.2%
3201810 285.1.1.0 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like 0.75 67.0 6.70e-01 93.9% 91.4%
3400014 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.75 61.0 6.47e-01 91.1% 95.0%
3873499 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.75 56.0 6.37e-01 81.0% 99.3%
1914461 285.1.1.0 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like 0.74 67.0 6.85e-01 95.0% 99.4%
3395991 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.74 64.0 6.55e-01 91.1% 92.0%
1900947 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.72 64.0 6.60e-01 91.6% 98.8%
6943 285.1.1.1 a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.67 62.0 6.14e-01 97.8% 96.3%
3423002 7579.1.1.57 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_11 0.57 35.0 3.32e-01 82.1% 49.1%
4664463 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.52 38.0 3.10e-01 74.3% 72.6%
3259958 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.52 37.0 2.97e-01 74.3% 62.4%
3594788 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 30.0 2.81e-01 84.4% 43.0%
D4 medium residues 243-337
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 51.0 5.94e-01 73.7% 88.6%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 51.0 6.05e-01 76.8% 95.5%
2mk5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 54.0 4.82e-01 73.7% 62.6%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 43.0 5.46e-01 70.5% 94.7%
1r77A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 55.0 5.48e-01 76.8% 79.8%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 43.0 4.65e-01 73.7% 71.2%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 41.0 4.96e-01 70.5% 91.7%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 41.0 5.08e-01 70.5% 94.9%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 42.0 5.03e-01 70.5% 90.6%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.69 42.0 3.23e-01 70.5% 28.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 40.0 4.70e-01 70.5% 80.9%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 43.0 4.81e-01 75.8% 78.9%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 42.0 5.05e-01 73.7% 92.1%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 41.0 4.30e-01 73.7% 65.1%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 41.0 4.86e-01 76.8% 87.7%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 41.0 4.72e-01 70.5% 81.4%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 41.0 4.37e-01 75.8% 67.9%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 42.0 5.12e-01 75.8% 98.3%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 40.0 3.99e-01 70.5% 56.1%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 41.0 4.90e-01 70.5% 91.9%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 40.0 4.81e-01 70.5% 93.2%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 40.0 4.84e-01 70.5% 93.3%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 43.0 5.10e-01 76.8% 95.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 40.0 4.93e-01 70.5% 96.6%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 42.0 4.96e-01 70.5% 90.9%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 41.0 4.41e-01 70.5% 71.6%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 42.0 4.79e-01 75.8% 85.7%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 40.0 4.93e-01 73.7% 96.7%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 41.0 4.78e-01 70.5% 88.1%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 41.0 4.91e-01 75.8% 95.2%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 41.0 4.87e-01 70.5% 93.7%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 41.0 4.21e-01 70.5% 65.2%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 42.0 4.89e-01 70.5% 92.5%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 41.0 4.54e-01 70.5% 82.4%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 42.0 4.95e-01 76.8% 98.4%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 37.0 4.47e-01 76.8% 98.1%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 37.0 4.35e-01 76.8% 88.7%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 48.0 4.91e-01 83.2% 97.8%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 35.0 4.04e-01 76.8% 83.9%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 3.60e-01 70.5% 94.7%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 46.0 4.49e-01 84.2% 76.9%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 36.0 3.84e-01 75.8% 74.4%
7pzaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 35.0 3.22e-01 77.9% 51.6%
4amwA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 33.0 3.74e-01 93.7% 87.3%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.42e-01 84.2% 56.1%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.53e-01 75.8% 99.1%
2qqkA02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.50 34.0 3.24e-01 81.1% 57.4%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3204891 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.88 62.0 7.02e-01 72.6% 100.0%
4602101 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.83 53.0 6.32e-01 70.5% 93.8%
4303967 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 63.0 6.52e-01 78.9% 98.9%
4386715 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.82 59.0 6.22e-01 73.7% 89.4%
4038705 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.82 54.0 6.48e-01 75.8% 98.5%
4196229 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.81 53.0 6.16e-01 73.7% 90.0%
137947 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.81 54.0 6.38e-01 76.8% 97.0%
4207556 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.80 55.0 6.33e-01 70.5% 97.1%
4520767 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.80 52.0 6.00e-01 74.7% 90.0%
4427420 4.1.1.436 beta barrels › SH3 › SH3 › SH3 › PF29249 0.80 55.0 5.95e-01 76.8% 83.7%
4032300 4.1.1.59 beta barrels › SH3 › SH3 › SH3 › SH3_5 0.80 57.0 5.87e-01 73.7% 86.7%
3700744 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 57.0 5.60e-01 75.8% 98.0%
1290375 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.77 52.0 6.14e-01 70.5% 98.5%
1905739 4.1.1.59 beta barrels › SH3 › SH3 › SH3 › SH3_5 0.75 55.0 5.84e-01 76.8% 91.9%
3906249 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 42.0 4.70e-01 70.5% 73.3%
3535437 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 45.0 5.50e-01 77.9% 98.3%
2834765 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 42.0 4.82e-01 70.5% 79.7%
3778124 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 41.0 4.86e-01 70.5% 83.1%
4291404 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 48.0 5.33e-01 70.5% 88.0%
3885696 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 45.0 5.32e-01 78.9% 93.8%
4020558 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 42.0 4.91e-01 73.7% 86.2%
3769245 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 43.0 4.76e-01 70.5% 77.3%
3535424 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 42.0 4.83e-01 70.5% 81.4%
3490689 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 41.0 4.73e-01 70.5% 80.0%
3905176 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 42.0 4.97e-01 70.5% 89.2%
3783847 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 42.0 5.01e-01 70.5% 90.8%
3773481 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 43.0 4.62e-01 70.5% 75.0%
3529708 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 42.0 4.68e-01 76.8% 78.7%
3522694 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 42.0 4.24e-01 70.5% 62.1%
3573262 4.1.1.91 beta barrels › SH3 › SH3 › SH3 › hSH3 0.68 42.0 4.34e-01 76.8% 65.6%
2636173 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 40.0 4.64e-01 70.5% 84.6%
4012002 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 41.0 4.76e-01 70.5% 85.7%
3695780 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 43.0 4.64e-01 77.9% 77.5%
3705995 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 44.0 4.79e-01 70.5% 98.8%
3413864 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 40.0 3.30e-01 70.5% 37.0%
4138563 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 36.0 4.18e-01 76.8% 81.5%
4335022 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.45e-01 76.8% 72.6%
3213653 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 42.0 4.59e-01 70.5% 93.8%
3869065 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 43.0 4.26e-01 75.8% 68.0%
4354770 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.60 35.0 3.98e-01 76.8% 77.1%
3798523 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 43.0 4.62e-01 75.8% 96.2%
3572436 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 44.0 4.18e-01 78.9% 82.7%
3289944 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.57 42.0 4.36e-01 96.8% 83.3%
3473172 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 38.0 4.08e-01 80.0% 83.7%
3478704 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 35.0 4.11e-01 77.9% 93.8%
3624076 206.1.1.19 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Fam20C 0.55 39.0 2.52e-01 73.7% 39.5%
3219682 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 38.0 3.42e-01 74.7% 92.6%