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MN908694.1__QIG59079.1__SEA_RUBYRALPH_71__00071
Bact-VirMN908694.1__QIG59079.1__SEA_RUBYRALPH_71__00071
Identity
- Accession:
- MN908694 ↗
- Kingdom:
- phage
Quality
83.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 63-94
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5cbgA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 53.0 | 3.75e-01 | 81.2% | 39.2% |
| 4cgyA04 | 1.10.290.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 | 0.70 | 54.0 | 3.71e-01 | 93.8% | 23.2% |
| 2db7A01 | 6.10.250.980 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.69 | 47.0 | 4.04e-01 | 71.9% | 50.9% |
| 3c24A02 | 1.10.3640.10 | Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal | 0.69 | 49.0 | 3.47e-01 | 81.2% | 24.0% |
| 3ragB00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.68 | 49.0 | 2.98e-01 | 81.2% | 12.8% |
| 6k8nA02 | 1.10.290.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 | 0.67 | 52.0 | 3.62e-01 | 93.8% | 24.4% |
| 4yt2A02 | 1.20.120.1300 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hmd, C-terminal helical subdomain | 0.67 | 51.0 | 3.55e-01 | 84.4% | 26.4% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 53.0 | 4.01e-01 | 90.6% | 43.9% |
| 1cy9A01 | 1.10.290.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 | 0.67 | 51.0 | 3.57e-01 | 93.8% | 24.6% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 55.0 | 4.49e-01 | 90.6% | 51.7% |
| 1xb2B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.65 | 48.0 | 4.04e-01 | 84.4% | 60.0% |
| 3fewX02 | 3.30.1310.40 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › | 0.65 | 46.0 | 3.29e-01 | 71.9% | 27.4% |
| 3pqaB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.64 | 51.0 | 3.11e-01 | 100.0% | 54.8% |
| 3rauA00 | 1.25.40.280 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains | 0.64 | 52.0 | 2.98e-01 | 93.8% | 30.2% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 51.0 | 4.32e-01 | 93.8% | 56.4% |
| 1qusA01 | 1.10.8.350 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial muramidase | 0.62 | 53.0 | 3.68e-01 | 100.0% | 91.2% |
| 8dqwG01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.60 | 50.0 | 3.15e-01 | 96.9% | 59.4% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 47.0 | 3.50e-01 | 90.6% | 47.1% |
| 2ftxA00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.58 | 47.0 | 3.46e-01 | 93.8% | 68.5% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.58 | 46.0 | 3.89e-01 | 93.8% | 58.6% |
| 8fbnB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 49.0 | 2.89e-01 | 93.8% | 27.0% |
| 4uqvF02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 41.0 | 2.78e-01 | 100.0% | 40.7% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4272495 | 589.1.1.0 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain | 0.91 | 60.0 | 3.74e-01 | 75.0% | 14.2% |
| 3635576 | 7528.1.1.3 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_III | 0.86 | 69.0 | 4.39e-01 | 96.9% | 19.4% |
| 3389858 | 3379.1.1.0 ↗ | extended segments › Photosystem II reaction center protein ycf12 › Photosystem II reaction center protein ycf12 › Photosystem II reaction center protein ycf12 | 0.75 | 52.0 | 4.59e-01 | 71.9% | 62.2% |
| 3617913 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.74 | 56.0 | 4.78e-01 | 81.2% | 78.0% |
| 3226420 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.74 | 56.0 | 4.95e-01 | 81.2% | 86.7% |
| 5078217 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.72 | 57.0 | 4.02e-01 | 93.8% | 29.5% |
| 3756243 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.71 | 54.0 | 3.77e-01 | 93.8% | 24.2% |
| 4976526 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 56.0 | 3.77e-01 | 93.8% | 22.3% |
| 3612398 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.70 | 54.0 | 3.69e-01 | 90.6% | 23.3% |
| 3305633 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.69 | 54.0 | 3.67e-01 | 93.8% | 23.2% |
| 3216945 | 101.1.1.102 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Lin-8 | 0.69 | 50.0 | 3.42e-01 | 81.2% | 22.8% |
| 4976716 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 53.0 | 4.26e-01 | 93.8% | 41.4% |
| 4544741 | 101.1.1.2 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC | 0.69 | 57.0 | 4.74e-01 | 100.0% | 58.3% |
| 4324718 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.69 | 53.0 | 3.56e-01 | 93.8% | 21.5% |
| 3820907 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 53.0 | 4.23e-01 | 90.6% | 43.1% |
| 3368826 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.68 | 52.0 | 3.53e-01 | 93.8% | 20.7% |
| 5021952 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.68 | 53.0 | 3.57e-01 | 93.8% | 21.5% |
| 4073954 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.68 | 53.0 | 3.55e-01 | 93.8% | 21.5% |
| 3594756 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 53.0 | 3.59e-01 | 93.8% | 22.3% |
| 4012761 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.67 | 50.0 | 2.95e-01 | 81.2% | 10.7% |
| 4466579 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.67 | 50.0 | 3.41e-01 | 90.6% | 21.5% |
| 4928626 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.67 | 49.0 | 2.85e-01 | 81.2% | 9.6% |
| 3284160 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.66 | 49.0 | 4.60e-01 | 81.2% | 100.0% |
| 5055460 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.66 | 48.0 | 2.85e-01 | 81.2% | 19.3% |
| 4930784 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.66 | 50.0 | 4.40e-01 | 87.5% | 98.0% |
| 3484301 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.66 | 46.0 | 2.96e-01 | 75.0% | 18.1% |
| 5052669 | 2006.1.4.49 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_2 | 0.65 | 50.0 | 3.28e-01 | 84.4% | 20.0% |
| 3215052 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.65 | 46.0 | 3.41e-01 | 75.0% | 35.3% |
| 3912949 | 109.4.1.37 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BRO1 | 0.63 | 52.0 | 2.93e-01 | 93.8% | 29.6% |
| 4033200 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 43.0 | 4.04e-01 | 81.2% | 53.3% |
| 4984680 | 3962.1.1.1 ↗ | alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit › HsdM_N | 0.61 | 51.0 | 3.23e-01 | 96.9% | 18.8% |
| 3370517 | 109.1.1.6 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 | 0.60 | 47.0 | 2.99e-01 | 87.5% | 46.3% |
| 3977110 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.59 | 50.0 | 3.72e-01 | 100.0% | 74.1% |
| 1201116 | 129.1.1.17 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › PGDH_C | 0.55 | 44.0 | 3.45e-01 | 93.8% | 69.0% |
| 5014507 | 2006.1.4.36 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_3 | 0.54 | 44.0 | 3.03e-01 | 100.0% | 38.5% |