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MN929097.1__QKW95208.1__PDS1_28__00028

Bact-Vir

MN929097.1__QKW95208.1__PDS1_28__00028

Identity

Accession:
MN929097 ↗
Kingdom:
phage

Quality

79.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Parabacteroides_phage_PDS1

TaxID: 2709316

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-64
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 70.0 6.57e-01 98.1% 73.4%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 70.0 6.64e-01 98.1% 76.2%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 68.0 6.12e-01 100.0% 66.7%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 70.0 5.95e-01 100.0% 60.0%
3q9vA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 65.0 5.34e-01 100.0% 52.0%
1k78I00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 63.0 6.19e-01 98.1% 87.9%
2hqrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 59.0 4.75e-01 98.1% 46.2%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.72 42.0 4.24e-01 87.0% 58.2%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 56.0 5.57e-01 94.4% 91.1%
4ragA02 1.10.10.430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily 0.68 58.0 5.43e-01 98.1% 76.5%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 55.0 5.20e-01 100.0% 82.6%
4jykA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 52.0 5.16e-01 96.3% 86.2%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 40.0 3.65e-01 100.0% 47.9%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 41.0 3.63e-01 90.7% 45.6%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 53.0 4.36e-01 98.1% 50.0%
7z7vE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.62 47.0 4.66e-01 88.9% 78.3%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.62 38.0 3.13e-01 94.4% 34.3%
2k4jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.23e-01 100.0% 52.4%
3bbzA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 39.0 4.10e-01 90.7% 72.9%
2vxdA00 1.10.10.2100 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain 0.61 49.0 4.91e-01 94.4% 92.6%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.60 45.0 3.94e-01 83.3% 54.7%
3on2A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 47.0 3.40e-01 100.0% 27.4%
7t2rC01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.59 43.0 4.31e-01 92.6% 78.9%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 50.0 4.82e-01 100.0% 87.1%
2e1qC04 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 44.0 3.40e-01 85.2% 65.4%
6ygiB01 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.57 40.0 2.91e-01 90.7% 27.4%
1ff9A03 1.10.1870.10 Mainly Alpha › Orthogonal Bundle › Domain 3, Saccharopine reductase › Domain 3, Saccharopine reductase 0.57 45.0 3.95e-01 100.0% 91.0%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3167236 148.1.3.31 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM4_WHD 0.87 77.0 6.54e-01 100.0% 61.2%
4988081 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 73.0 6.71e-01 100.0% 72.9%
4438754 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.83 73.0 7.30e-01 98.1% 96.4%
3814573 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.83 74.0 5.85e-01 98.1% 53.3%
3969119 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.83 68.0 6.79e-01 98.1% 89.1%
3924903 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.83 73.0 6.88e-01 100.0% 83.1%
3623097 101.1.1.176 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.83 73.0 6.71e-01 100.0% 77.1%
3507881 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.82 71.0 7.10e-01 96.3% 94.5%
3740124 101.1.17.19 ↗ alpha arrays › HTH › HTH › FF domain › DEK_C 0.82 72.0 7.23e-01 98.1% 98.2%
5013924 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.81 72.0 6.04e-01 100.0% 58.9%
4979742 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 66.0 5.83e-01 100.0% 61.3%
3631692 101.1.1.176 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.81 71.0 6.94e-01 100.0% 93.3%
3632341 101.1.1.176 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.81 71.0 6.68e-01 98.1% 83.1%
3988383 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.81 67.0 5.45e-01 98.1% 50.0%
3397182 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.81 72.0 7.19e-01 100.0% 98.2%
3735853 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.80 70.0 6.83e-01 100.0% 90.0%
3475816 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.80 71.0 7.06e-01 100.0% 98.2%
3333032 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.80 69.0 6.83e-01 100.0% 93.1%
4024318 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 69.0 6.01e-01 100.0% 68.2%
3177082 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.80 68.0 6.62e-01 96.3% 86.7%
3444283 101.1.2.365 ↗ alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.79 68.0 6.86e-01 98.1% 98.1%
160563 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.79 66.0 5.81e-01 100.0% 63.0%
3782008 101.1.17.19 ↗ alpha arrays › HTH › HTH › FF domain › DEK_C 0.78 69.0 6.50e-01 100.0% 83.1%
2520598 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.78 66.0 4.94e-01 100.0% 38.6%
4513921 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.78 68.0 6.60e-01 100.0% 90.0%
3582795 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.78 68.0 6.59e-01 100.0% 93.3%
3806111 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.78 67.0 6.36e-01 100.0% 83.1%
3700443 101.1.1.176 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.78 67.0 6.38e-01 100.0% 83.1%
147132 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.77 65.0 5.34e-01 100.0% 52.0%
3982775 101.1.1.202 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.77 62.0 6.09e-01 98.1% 83.3%
4235730 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.77 67.0 6.53e-01 100.0% 91.7%
3313260 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.76 66.0 6.14e-01 100.0% 77.1%
3474421 101.1.2.365 ↗ alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.76 65.0 6.05e-01 100.0% 77.1%
3360103 3651.1.1.3 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › DUF4378 0.76 64.0 5.53e-01 100.0% 60.0%
3337263 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.75 64.0 5.50e-01 100.0% 60.0%
4127805 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.75 63.0 4.64e-01 100.0% 34.7%
3792105 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.75 64.0 6.28e-01 100.0% 90.0%
3228128 101.1.1.176 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.75 62.0 6.24e-01 96.3% 94.5%
3764771 101.1.2.365 ↗ alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.75 63.0 6.30e-01 98.1% 96.4%
4931573 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 62.0 6.05e-01 96.3% 91.7%
3840404 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.74 63.0 6.18e-01 100.0% 90.0%
5027756 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 58.0 6.01e-01 100.0% 94.0%
4958343 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.73 62.0 5.28e-01 100.0% 57.8%
4974418 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 59.0 5.66e-01 100.0% 81.2%
4953237 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 54.0 5.39e-01 100.0% 83.6%
3670440 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.70 60.0 5.16e-01 100.0% 61.1%
3700785 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 60.0 5.72e-01 100.0% 87.7%
5022894 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 4.71e-01 100.0% 52.6%
3247967 101.1.1.28 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SWIRM 0.69 58.0 5.03e-01 100.0% 60.0%
3252236 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.68 55.0 5.53e-01 98.1% 90.9%
3973616 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 5.27e-01 98.1% 81.7%
3396075 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.64 56.0 4.97e-01 100.0% 90.0%
3747266 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.64 55.0 3.78e-01 100.0% 27.5%
4297295 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.61 39.0 3.52e-01 87.0% 48.0%
5036863 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.55 44.0 3.06e-01 96.3% 28.3%
3886349 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.55 44.0 3.31e-01 100.0% 52.7%
5018636 605.1.1.3 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_2 0.55 37.0 3.40e-01 87.0% 54.3%
3904130 1203.1.2.1 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 0.55 42.0 3.40e-01 88.9% 80.0%
4014316 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 44.0 2.75e-01 100.0% 14.2%
4972573 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 45.0 2.76e-01 100.0% 14.4%
4927922 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.51 41.0 4.00e-01 96.3% 81.7%