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MN939539.1__QIG60872.1__vBLinoVEfB7_129__00129
Bact-VirMN939539.1__QIG60872.1__vBLinoVEfB7_129__00129
Identity
- Accession:
- MN939539 ↗
- Kingdom:
- phage
Quality
94.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Pecentumvirus›
Listeria_phage_vB_Lino_VEfB7
TaxID: 2712944
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 30-84
Domain cluster:
rep: ribonucleotide_reductase_large_subunit__YP_009220529__White_spot_syndrome_virus__342409__D469-546
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 32.0 | 7.50e-08 | 96.4% | 10.9% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 49.0 | 4.08e-01 | 70.9% | 46.3% |
| 4j0eA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 56.0 | 3.77e-01 | 96.4% | 35.1% |
| 4o6mA01 | 3.90.550.30 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › | 0.64 | 41.0 | 3.08e-01 | 100.0% | 26.7% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 48.0 | 3.70e-01 | 96.4% | 53.4% |
| 7mcsC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 38.0 | 2.59e-01 | 72.7% | 98.1% |
| 3hdtA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 44.0 | 3.14e-01 | 100.0% | 82.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4972388 | 101.1.2.949 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28863 | 0.63 | 54.0 | 3.77e-01 | 100.0% | 34.5% |
| 3167315 | 109.4.1.1693 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29955 | 0.61 | 47.0 | 2.95e-01 | 87.3% | 45.9% |
| 3325473 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.58 | 46.0 | 3.35e-01 | 100.0% | 30.6% |
| 3238499 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.56 | 47.0 | 3.09e-01 | 92.7% | 66.8% |