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MN939540.1__QIG60992.1__vBLivaVAfA18_068__00068
Bact-VirMN939540.1__QIG60992.1__vBLivaVAfA18_068__00068
Identity
- Accession:
- MN939540 ↗
- Kingdom:
- phage
Quality
81.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Pecentumvirus›
Listeria_phage_vB_Liva_VAfA18
TaxID: 2712945
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-151
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7smgD00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.79 | 75.0 | 7.35e-01 | 100.0% | 93.7% |
| 3nqwA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.79 | 74.0 | 6.65e-01 | 100.0% | 85.4% |
| 7qocA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.78 | 73.0 | 6.45e-01 | 100.0% | 82.9% |
| 4xxiA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.59 | 44.0 | 4.31e-01 | 88.7% | 71.4% |
| 1cpcA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.56 | 46.0 | 4.32e-01 | 88.0% | 72.8% |
| 2vsgA02 | 1.10.470.10 | Mainly Alpha › Orthogonal Bundle › Variant Surface Glycoprotein, subunit A; domain 2 › Variant Surface Glycoprotein, subunit A, domain 2 | 0.54 | 39.0 | 3.74e-01 | 76.7% | 88.7% |
| 4udsA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 37.0 | 3.34e-01 | 72.2% | 73.2% |
| 6o0aA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 41.0 | 3.97e-01 | 84.2% | 73.8% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4959337 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.80 | 77.0 | 7.53e-01 | 100.0% | 97.9% |
| 3960277 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.80 | 76.0 | 7.36e-01 | 100.0% | 96.6% |
| 3573746 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.77 | 57.0 | 5.84e-01 | 77.4% | 85.4% |
| 4995646 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.67 | 59.0 | 5.32e-01 | 95.5% | 89.4% |
| 5024310 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.65 | 59.0 | 5.27e-01 | 97.0% | 89.4% |
| 3215609 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.54 | 45.0 | 3.56e-01 | 91.7% | 97.5% |
| 3388493 | 633.10.1.15 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Transmemb_17 | 0.53 | 31.0 | 3.22e-01 | 88.0% | 59.2% |
| 3824606 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.52 | 39.0 | 3.57e-01 | 78.9% | 99.4% |
| None | — | 0.51 | 45.0 | 3.35e-01 | 100.0% | 71.0% |