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MN940411.1__QIA28632.1__X__00130

Bact-Vir

MN940411.1__QIA28632.1__X__00130

Identity

Accession:
MN940411 ↗
Kingdom:
phage

Quality

79.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Phage_f2b1

TaxID: 2708592

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-64
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.72 49.0 3.15e-01 70.5% 37.2%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.70 53.0 4.23e-01 82.0% 75.0%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.68 48.0 4.14e-01 75.4% 81.4%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.66 55.0 3.84e-01 100.0% 42.0%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.65 57.0 3.62e-01 98.4% 89.3%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 56.0 4.02e-01 100.0% 67.4%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.65 52.0 4.48e-01 88.5% 87.0%
2hezA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.65 56.0 3.58e-01 98.4% 87.9%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 57.0 4.09e-01 100.0% 69.1%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.64 51.0 4.04e-01 88.5% 97.7%
3qcwA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 56.0 3.98e-01 100.0% 64.6%
2r1bA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 56.0 3.91e-01 100.0% 72.2%
2r16A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 55.0 3.99e-01 100.0% 70.3%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.63 46.0 2.99e-01 80.3% 94.7%
3sh4A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 54.0 3.86e-01 100.0% 67.7%
1kqrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 53.0 4.03e-01 100.0% 78.8%
1pz7A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 54.0 3.88e-01 100.0% 70.2%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 54.0 3.88e-01 100.0% 67.0%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 49.0 3.36e-01 88.5% 57.7%
2jd4A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 53.0 3.86e-01 100.0% 71.6%
2h0bC00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 53.0 3.81e-01 100.0% 68.9%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 44.0 3.10e-01 78.7% 85.3%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.59 51.0 4.39e-01 100.0% 90.1%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.59 44.0 4.44e-01 78.7% 83.6%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 50.0 3.59e-01 100.0% 81.5%
2bf1A00 2.170.40.20 Mainly Beta › Beta Complex › HIV Envelope Protein Gp120; Chain G › Human immunodeficiency virus 1, Gp160, envelope glycoprotein 0.58 51.0 3.28e-01 100.0% 88.8%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 51.0 4.21e-01 100.0% 89.5%
2zwaA02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.58 44.0 2.79e-01 82.0% 33.4%
6hgcA01 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.58 50.0 3.59e-01 100.0% 86.9%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.56 41.0 3.80e-01 80.3% 97.6%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 2.96e-01 95.1% 98.1%
2e4mC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 44.0 3.50e-01 95.1% 99.3%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 44.0 3.60e-01 91.8% 100.0%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 39.0 3.27e-01 75.4% 55.7%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 46.0 3.74e-01 98.4% 79.4%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 46.0 3.31e-01 98.4% 75.1%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.54 40.0 2.42e-01 78.7% 95.4%
1m3qA01 3.30.310.40 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.54 40.0 3.66e-01 83.6% 73.0%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 45.0 3.93e-01 98.4% 100.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.42e-01 93.4% 74.2%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 4.26e-01 90.2% 100.0%
5kvsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 35.0 2.74e-01 75.4% 87.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4527067 206.1.3.40 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.74 65.0 4.29e-01 100.0% 31.0%
4032478 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.71 50.0 4.89e-01 78.7% 69.2%
4030664 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.70 50.0 3.58e-01 75.4% 77.7%
3248011 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.70 50.0 3.11e-01 75.4% 22.4%
3608111 5.1.4.402 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30552 0.69 52.0 3.12e-01 80.3% 25.5%
3863714 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.69 52.0 3.51e-01 83.6% 60.4%
3754136 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.68 51.0 3.15e-01 78.7% 36.1%
3283450 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.68 51.0 3.39e-01 82.0% 45.4%
3256259 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.68 53.0 3.22e-01 82.0% 74.4%
3888391 5.1.4.325 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30552 0.68 51.0 3.14e-01 80.3% 94.3%
3524156 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 51.0 3.16e-01 82.0% 35.3%
3640540 5.1.4.97 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop 0.67 46.0 2.76e-01 72.1% 19.8%
3512735 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.67 50.0 3.42e-01 82.0% 62.7%
3995040 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.66 58.0 4.09e-01 100.0% 61.5%
3512368 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.66 58.0 4.23e-01 98.4% 70.9%
3927632 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.66 58.0 4.08e-01 100.0% 67.7%
3629602 5.1.5.148 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, HELP, Beta-prop_EML 0.66 50.0 3.12e-01 82.0% 63.5%
3989333 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.65 43.0 4.39e-01 78.7% 70.0%
3938315 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.65 56.0 3.94e-01 100.0% 62.9%
416852 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.64 57.0 4.08e-01 100.0% 68.7%
3988738 4111.1.1.1 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AAL_decarboxy 0.64 56.0 3.82e-01 100.0% 29.4%
3402727 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.64 55.0 4.00e-01 100.0% 67.2%
4588425 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 46.0 2.89e-01 78.7% 32.7%
3793405 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.63 55.0 3.91e-01 100.0% 63.6%
3511755 10.1.1.1 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.63 55.0 4.00e-01 100.0% 72.8%
3736592 5.1.4.361 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7165 0.63 49.0 2.90e-01 83.6% 76.7%
3769937 10.1.1.1 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.63 55.0 3.84e-01 100.0% 70.3%
3917548 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.63 55.0 3.93e-01 100.0% 64.7%
3552666 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.62 54.0 3.91e-01 100.0% 65.9%
3894967 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.62 49.0 3.40e-01 83.6% 71.4%
169853 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.62 43.0 3.94e-01 73.8% 56.5%
3214084 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.62 54.0 3.96e-01 100.0% 70.0%
3512783 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.62 53.0 3.74e-01 100.0% 72.9%
3394965 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.62 53.0 3.78e-01 100.0% 64.5%
3593073 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.61 47.0 3.25e-01 82.0% 68.2%
3751611 10.1.1.77 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1, Laminin_G_2 0.61 53.0 3.69e-01 100.0% 66.0%
3389900 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.61 52.0 3.78e-01 100.0% 63.2%
4889522 3321.1.1.2 ↗ a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › DNA_pol_B_N 0.61 46.0 3.79e-01 82.0% 51.8%
2541746 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.60 52.0 3.72e-01 100.0% 67.5%
3507415 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.60 51.0 3.70e-01 100.0% 68.9%
3586827 274.1.1.25 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.60 46.0 3.67e-01 82.0% 47.8%
3455310 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 46.0 2.92e-01 83.6% 47.0%
3706798 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 3.28e-01 98.4% 97.0%
3212404 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.58 45.0 2.96e-01 83.6% 40.0%
3597933 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 44.0 3.15e-01 82.0% 72.3%
3611076 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 50.0 3.17e-01 98.4% 96.5%
3559578 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.57 43.0 3.05e-01 83.6% 65.4%
3840141 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.57 41.0 3.77e-01 77.0% 83.7%
5053431 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.57 45.0 3.43e-01 90.2% 67.7%
4014784 9.14.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.56 44.0 3.82e-01 88.5% 98.0%
3710731 633.23.1.23 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin 0.55 41.0 3.06e-01 83.6% 74.3%
3471648 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 47.0 2.84e-01 96.7% 83.4%
3211176 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.55 46.0 3.03e-01 91.8% 25.9%
3785319 9.14.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.55 42.0 3.89e-01 88.5% 95.3%
4220398 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.55 35.0 2.64e-01 80.3% 23.5%
3964304 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.53 45.0 3.96e-01 91.8% 86.4%
5015520 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 46.0 3.18e-01 98.4% 81.4%
3227136 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.52 46.0 3.19e-01 100.0% 33.3%
3227881 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.51 44.0 3.29e-01 98.4% 41.2%
D2 high residues 68-127
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 53.0 4.73e-01 100.0% 81.5%
3jb9H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.61e-01 96.7% 96.1%
2yxlA03 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.59 35.0 3.62e-01 100.0% 60.3%
3afhA02 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.59 42.0 3.61e-01 91.7% 45.2%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 40.0 3.11e-01 71.7% 52.5%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.70e-01 96.7% 89.4%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.57 39.0 3.64e-01 75.0% 100.0%
2wy3B00 2.60.40.1990 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 49.0 3.82e-01 100.0% 65.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 46.0 3.53e-01 100.0% 62.3%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.56 47.0 4.19e-01 100.0% 93.7%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.56 39.0 3.57e-01 73.3% 79.3%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.56e-01 98.3% 90.9%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 40.0 3.21e-01 81.7% 72.6%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.55 46.0 4.49e-01 96.7% 89.4%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.03e-01 75.0% 56.8%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 40.0 3.07e-01 81.7% 44.8%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 44.0 3.46e-01 95.0% 45.5%
2a90A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 40.0 3.60e-01 86.7% 82.7%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.54 34.0 2.81e-01 100.0% 34.2%
4bwsF00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.54 37.0 3.64e-01 80.0% 65.7%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 38.0 3.41e-01 78.3% 55.4%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 45.0 3.81e-01 100.0% 73.0%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.53 45.0 3.77e-01 100.0% 54.5%
1wjnA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 45.0 3.97e-01 100.0% 80.4%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.53 44.0 4.01e-01 98.3% 68.5%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.53 45.0 3.99e-01 100.0% 92.4%
7bv5D01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 40.0 2.99e-01 83.3% 47.2%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 39.0 3.38e-01 80.0% 100.0%
3enuA00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.52 45.0 3.72e-01 100.0% 95.6%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.52 43.0 3.69e-01 100.0% 78.9%
3p0jA03 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.51 43.0 3.78e-01 98.3% 73.7%
5h4eA01 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.51 39.0 2.75e-01 88.3% 69.7%
1g0dA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.41e-01 98.3% 75.2%
1mt1B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.51 37.0 3.07e-01 80.0% 49.1%
1glvA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 42.0 3.54e-01 96.7% 67.6%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5023022 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.65 49.0 4.33e-01 100.0% 55.6%
3968122 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.64 40.0 4.50e-01 83.3% 86.7%
4931464 822.3.1.0 ↗ a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 0.63 47.0 4.46e-01 83.3% 78.7%
4004704 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.63 40.0 4.40e-01 83.3% 86.7%
4064187 304.1.1.0 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.62 45.0 3.60e-01 78.3% 91.2%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.61 41.0 4.48e-01 88.3% 93.3%
5022263 322.1.1.2 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.60 52.0 4.33e-01 100.0% 69.1%
3611587 4342.1.1.0 ↗ alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like 0.60 46.0 3.16e-01 85.0% 23.6%
3853030 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.58 42.0 3.05e-01 78.3% 33.7%
3898644 355.1.1.2 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PSI 0.57 41.0 3.81e-01 78.3% 80.0%
3500427 3914.1.1.2 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.57 42.0 2.36e-01 80.0% 53.2%
4886926 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.56 41.0 3.38e-01 80.0% 65.2%
4948272 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.55 39.0 3.55e-01 75.0% 94.0%
3954543 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.55 38.0 2.98e-01 73.3% 53.8%
3251827 3570.1.1.0 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily 0.55 42.0 3.27e-01 88.3% 84.0%
5031911 206.1.3.17 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF1297 0.54 45.0 2.99e-01 98.3% 23.3%
3429643 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.54 46.0 3.94e-01 100.0% 87.6%
3781751 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.52e-01 95.0% 85.4%
3409626 4114.1.1.2 ↗ a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus 0.54 40.0 3.37e-01 81.7% 44.5%
3664558 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.54 47.0 4.00e-01 100.0% 93.0%
4011483 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.77e-01 98.3% 75.7%
5069289 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.54 42.0 3.51e-01 90.0% 96.5%
5078886 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 45.0 3.83e-01 100.0% 56.4%
4134167 2006.1.1.37 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 0.53 46.0 2.98e-01 100.0% 25.0%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.52 36.0 3.80e-01 83.3% 88.0%
4027800 304.57.1.0 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.52 37.0 3.27e-01 78.3% 98.9%
2870324 4012.3.1.1 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI 0.52 38.0 3.84e-01 81.7% 89.7%
4927986 206.1.3.17 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF1297 0.51 37.0 2.36e-01 78.3% 14.0%
4490981 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.51 42.0 3.60e-01 98.3% 77.3%
3731378 101.1.9.83 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.51 33.0 3.11e-01 100.0% 53.3%
4331814 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.51 42.0 3.55e-01 100.0% 69.6%
4155354 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.51 42.0 3.51e-01 100.0% 66.7%
4418109 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.50 42.0 3.33e-01 100.0% 57.3%
3286853 304.4.1.3 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.50 37.0 3.45e-01 81.7% 96.2%