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MN940411.1__QIA28639.1__X__00137

Bact-Vir

MN940411.1__QIA28639.1__X__00137

Identity

Accession:
MN940411 ↗
Kingdom:
phage

Quality

77.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Phage_f2b1

TaxID: 2708592

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-71
PDB
Domain cluster: rep: LacPavin_0818_WC45_scaffold_160996_curated_closed_complete_prodigal-single.1__X__X__00029__D9-69
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hssA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 54.0 3.58e-01 98.3% 85.4%
4kxfB02 1.10.1900.50 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › 0.64 46.0 4.71e-01 100.0% 82.5%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.63 41.0 4.14e-01 100.0% 66.1%
2ifcA01 1.10.580.10 Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 0.62 50.0 3.40e-01 93.3% 83.6%
3tqgB01 1.10.580.10 Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 0.61 48.0 3.30e-01 91.7% 81.2%
1af7A01 1.10.155.10 Mainly Alpha › Orthogonal Bundle › Chemotaxis Receptor Methyltransferase Cher; domain 1 › Chemotaxis receptor methyltransferase CheR, N-terminal domain 0.61 52.0 4.78e-01 100.0% 80.0%
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.58 50.0 4.68e-01 100.0% 83.1%
2v8pA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.57 43.0 3.25e-01 98.3% 32.3%
2zc2A00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.56 47.0 4.38e-01 98.3% 76.0%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 39.0 3.79e-01 76.7% 98.6%
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 46.0 3.87e-01 100.0% 85.1%
3hx3A01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.55 45.0 4.38e-01 98.3% 85.1%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 36.0 3.45e-01 100.0% 56.0%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.54 48.0 4.36e-01 98.3% 82.1%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 44.0 3.98e-01 100.0% 65.5%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 43.0 3.67e-01 93.3% 84.2%
1fc6A01 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.51 41.0 3.53e-01 93.3% 54.1%
6j8eA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.51 37.0 3.07e-01 76.7% 69.8%
2qgnA02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.51 39.0 3.55e-01 83.3% 85.4%
2blfB01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.50 36.0 3.58e-01 100.0% 74.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3755357 108.1.1.74 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7+EF-hand_8 0.69 52.0 4.69e-01 98.3% 58.8%
3951354 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.62 50.0 4.97e-01 100.0% 87.7%
4525688 518.1.1.1 ↗ alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N 0.62 51.0 4.72e-01 100.0% 77.6%
5003681 2002.1.1.25 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.60 50.0 3.06e-01 100.0% 14.1%
3935680 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.57 37.0 3.62e-01 71.7% 60.0%
3408346 633.24.1.2 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 0.57 40.0 3.73e-01 73.3% 65.3%
2774099 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.55 37.0 2.55e-01 70.0% 55.6%
3261546 103.1.1.3 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N 0.55 48.0 4.32e-01 100.0% 78.8%
5044325 4125.1.1.0 ↗ alpha superhelices › BH3980-like › BH3980-like › BH3980-like 0.55 45.0 4.46e-01 100.0% 98.5%
3585796 4299.1.1.1 ↗ alpha arrays › BSD domain › BSD domain › BSD domain › BSD 0.54 39.0 3.49e-01 85.0% 53.0%
4940123 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.53 36.0 2.50e-01 70.0% 57.1%
4029124 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.53 45.0 3.02e-01 98.3% 67.8%
4999570 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 3.80e-01 93.3% 70.0%
3657981 198.1.1.16 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › HTH_70 0.52 37.0 3.40e-01 76.7% 58.7%
5050243 187.1.1.1 ↗ alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_8 0.51 39.0 3.53e-01 86.7% 74.4%
2577269 7103.1.1.1 ↗ alpha arrays › MJ1004, C-terminal domain › MJ1004, C-terminal domain › MJ1004, C-terminal domain › PF31224 0.50 40.0 3.73e-01 100.0% 82.8%