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MN940411.1__QIA28641.1__X__00139

Bact-Vir

MN940411.1__QIA28641.1__X__00139

Identity

Accession:
MN940411 ↗
Kingdom:
phage

Quality

83.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Phage_f2b1

TaxID: 2708592

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-62
PDB
Domain cluster: rep: KT151959.1__ALA47905.1__SUNDANCE_89__00089__D74-121
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vajA02 3.30.1490.150 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 0.71 55.0 5.20e-01 85.2% 98.6%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.66 48.0 4.09e-01 78.7% 58.4%
2w3sA04 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.65 52.0 4.32e-01 91.8% 90.4%
1gsaA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.65 49.0 4.83e-01 85.2% 96.9%
2wfpA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 49.0 4.18e-01 86.9% 54.1%
3gmgA00 3.30.70.1880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 0.62 53.0 4.12e-01 100.0% 55.9%
3d82A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 48.0 4.09e-01 86.9% 71.6%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.61 45.0 4.15e-01 82.0% 71.1%
3kq4B04 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.61 46.0 3.85e-01 83.6% 83.8%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.61 43.0 3.40e-01 77.0% 65.9%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.60 45.0 4.47e-01 83.6% 96.9%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 46.0 3.84e-01 86.9% 50.5%
2iv2X04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.59 43.0 3.62e-01 77.0% 58.6%
4jcwA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.59 44.0 3.73e-01 82.0% 98.1%
4f23A02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.58 49.0 3.44e-01 98.4% 70.3%
6v55A01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.58 45.0 3.79e-01 86.9% 60.7%
5tpvB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 46.0 3.57e-01 86.9% 40.6%
4jzjC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 4.29e-01 83.6% 78.6%
4ga6A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.58 42.0 3.85e-01 78.7% 98.8%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 3.57e-01 78.7% 81.7%
3d30A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.57 43.0 3.65e-01 83.6% 95.4%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 3.76e-01 86.9% 64.0%
3qfgA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 40.0 3.10e-01 75.4% 67.6%
1y9qA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 44.0 3.94e-01 88.5% 82.8%
6ibkA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 42.0 3.76e-01 85.2% 76.3%
2dmhA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 39.0 3.02e-01 72.1% 46.4%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 43.0 3.15e-01 86.9% 29.2%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.22e-01 72.1% 92.0%
3m5gA02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.56 45.0 3.28e-01 98.4% 70.2%
2g9gA00 2.60.120.1020 Mainly Beta › Sandwich › Jelly Rolls › PAW domain 0.56 43.0 3.14e-01 86.9% 37.0%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.51e-01 86.9% 50.4%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 41.0 3.86e-01 85.2% 89.9%
1wlfA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.55 39.0 3.62e-01 78.7% 100.0%
1m1cA00 3.90.1840.10 Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein 0.55 40.0 2.39e-01 86.9% 10.0%
1hgeA01 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.55 45.0 3.22e-01 100.0% 69.4%
5e6tA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.54 41.0 3.62e-01 83.6% 96.8%
2wr1A02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.54 43.0 3.13e-01 98.4% 70.1%
4dmiA02 2.60.120.1010 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 3.47e-01 95.1% 80.3%
1m4kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.65e-01 86.9% 79.6%
1fu0A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.54 41.0 3.76e-01 88.5% 74.7%
2ki8A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.54 38.0 3.14e-01 78.7% 88.0%
1uf2C02 2.60.120.170 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 3.16e-01 88.5% 50.3%
3zxkA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 3.02e-01 96.7% 71.8%
2e7zA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.52 40.0 2.97e-01 82.0% 83.9%
1jelP00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.52 40.0 3.69e-01 88.5% 76.5%
4kx7A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.62e-01 83.6% 95.2%
6v46A02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.52 42.0 3.03e-01 98.4% 70.9%
2rftA02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.52 43.0 3.00e-01 100.0% 90.8%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.26e-01 80.3% 89.2%
2j42A01 3.90.182.10 Alpha Beta › Alpha-Beta Complex › Toxin - Anthrax Protective Antigen; domain 1 › Toxin - Anthrax Protective Antigen;domain 1 0.51 39.0 2.79e-01 90.2% 40.4%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.51 38.0 3.35e-01 90.2% 73.4%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5012965 6047.1.1.1 ↗ beta barrels › N-terminal domain in DUF2118 family › N-terminal domain in DUF2118 family › N-terminal domain in DUF2118 family › DUF2118 0.76 61.0 5.24e-01 90.2% 55.8%
4944194 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.65 52.0 3.82e-01 91.8% 57.8%
4044269 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 46.0 4.48e-01 78.7% 87.1%
4944045 4.17.1.2 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › Asparaginase 0.63 45.0 4.39e-01 78.7% 87.1%
3985230 10.12.1.63 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MPI_cupin_dom 0.62 49.0 4.34e-01 86.9% 58.9%
3538722 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.61 47.0 4.01e-01 83.6% 63.0%
4844446 10.5.1.1 ↗ beta sandwiches › jelly-roll › Viral protein domain › Viral protein domain › Hemagglutinin 0.60 52.0 3.30e-01 98.4% 48.8%
4362257 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.60 43.0 3.59e-01 75.4% 63.5%
5021739 11.1.1.33 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arch_flagellin 0.59 44.0 3.22e-01 80.3% 74.7%
3399868 219.1.1.24 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Herpes_teg_N 0.59 48.0 3.39e-01 100.0% 69.6%
4935216 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 44.0 3.39e-01 80.3% 72.1%
3226838 10.32.1.21 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PAW 0.59 47.0 3.42e-01 88.5% 40.6%
5020148 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 47.0 3.53e-01 90.2% 58.1%
5067107 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.59 43.0 3.96e-01 82.0% 100.0%
3230790 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 42.0 3.87e-01 77.0% 87.5%
4805066 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.58 45.0 3.83e-01 86.9% 63.0%
3510399 206.1.3.9 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Synapsin_C 0.58 44.0 3.20e-01 90.2% 28.4%
3215715 10.12.1.5 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C 0.58 45.0 3.80e-01 86.9% 50.9%
3705348 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.58 39.0 3.16e-01 70.5% 51.2%
4241168 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.58 42.0 3.85e-01 77.0% 100.0%
4935664 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.58 46.0 3.74e-01 88.5% 52.5%
3592717 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.58 39.0 2.80e-01 70.5% 46.6%
3403524 11.1.1.18 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LTD 0.58 44.0 3.56e-01 82.0% 79.2%
5038391 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.58 44.0 3.14e-01 86.9% 31.0%
4033853 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.58 41.0 3.59e-01 78.7% 60.0%
4998900 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.57 42.0 3.59e-01 78.7% 94.0%
3526966 11.2.1.79 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › CTSRT 0.57 39.0 3.00e-01 72.1% 52.4%
4949994 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 42.0 3.42e-01 80.3% 80.0%
3241712 390.1.1.7 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 0.57 39.0 3.71e-01 73.8% 86.7%
4930010 1.1.7.141 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MazE_antitoxin 0.57 43.0 3.84e-01 86.9% 85.3%
4108919 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.56 42.0 3.82e-01 80.3% 96.5%
4532472 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 45.0 3.92e-01 91.8% 78.0%
3613642 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 41.0 2.98e-01 77.0% 45.9%
3307369 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.56 39.0 3.69e-01 73.8% 84.0%
4950476 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 3.49e-01 86.9% 85.4%
3931991 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 43.0 3.56e-01 85.2% 55.7%
5011380 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 40.0 2.74e-01 78.7% 90.9%
4263053 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.55 40.0 3.69e-01 80.3% 96.5%
3609901 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 38.0 2.83e-01 72.1% 47.5%
5054391 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.55 40.0 3.63e-01 78.7% 98.8%
3187986 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.55 39.0 3.35e-01 77.0% 64.8%
4963275 223.1.1.191 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › DUF7285 0.55 41.0 3.62e-01 80.3% 90.0%
33 1.1.2.15 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PEX-2N 0.55 39.0 3.62e-01 78.7% 100.0%
5031966 5103.1.1.0 ↗ a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 0.54 45.0 3.78e-01 91.8% 81.0%
4972098 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 3.41e-01 80.3% 73.0%
4983428 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.53 42.0 2.99e-01 86.9% 32.8%
4998047 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.10e-01 80.3% 65.5%
4271417 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.53 43.0 2.95e-01 95.1% 28.1%
3499719 4261.1.1.2 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a 0.52 43.0 3.58e-01 100.0% 79.2%
3391397 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.52 40.0 3.64e-01 88.5% 94.4%
3891099 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 40.0 3.05e-01 83.6% 59.3%
4952061 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 39.0 3.06e-01 80.3% 96.0%
4872711 10.5.1.1 ↗ beta sandwiches › jelly-roll › Viral protein domain › Viral protein domain › Hemagglutinin 0.51 44.0 3.02e-01 100.0% 80.5%
2089784 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.51 38.0 2.65e-01 83.6% 96.6%
3645497 7508.1.1.1 ↗ a/b three-layered sandwiches › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › Glyco_transf_90 0.51 38.0 3.04e-01 83.6% 73.3%
3558844 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 38.0 3.06e-01 83.6% 60.0%
5052941 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 39.0 3.22e-01 91.8% 70.8%