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MN940411.1__QIA28658.1__X__00156

Bact-Vir

MN940411.1__QIA28658.1__X__00156

Identity

Accession:
MN940411 ↗
Kingdom:
phage

Quality

81.5 mean pLDDT

Taxonomy

TaxID: 2708592

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-43
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2conA00 6.20.210.10 Special › Other non-globular › Herpes Virus-1 › Nin one binding (NOB1), Zn-ribbon-like 0.76 54.0 4.38e-01 100.0% 39.2%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.73 59.0 5.39e-01 97.4% 76.8%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.66 48.0 3.79e-01 82.1% 38.6%
2dm2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 45.0 3.39e-01 74.4% 59.1%
1wevA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 45.0 3.94e-01 74.4% 62.5%
6hoyA02 2.20.28.200 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.65 55.0 5.18e-01 100.0% 85.7%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.61 45.0 3.76e-01 84.6% 44.4%
3unvA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.60 38.0 2.21e-01 89.7% 7.2%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.59 48.0 4.56e-01 100.0% 92.2%
1nuiA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 45.0 4.44e-01 89.7% 83.7%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.57 43.0 4.19e-01 100.0% 86.5%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 3.71e-01 100.0% 62.2%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 42.0 3.88e-01 100.0% 83.9%
2h5eA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 46.0 3.06e-01 97.4% 39.0%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 42.0 3.63e-01 100.0% 79.5%
8dc1A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 40.0 2.57e-01 94.9% 19.8%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.88e-01 100.0% 84.3%
2aaaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 41.0 3.19e-01 97.4% 68.6%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.51 35.0 3.00e-01 74.4% 73.6%
3c2qA01 2.40.420.10 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › conserved putative lor/sdh protein from methanococcus maripaludis s2 domain 0.51 40.0 3.31e-01 100.0% 61.4%
1mbmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 39.0 3.34e-01 94.9% 54.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4981580 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.95 76.0 7.34e-01 87.2% 77.3%
3903614 375.1.3.2 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP 0.83 71.0 5.94e-01 100.0% 56.9%
4475754 4076.2.1.5 a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MRNIP 0.83 70.0 5.90e-01 100.0% 56.9%
4263982 375.1.1.302 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MRNIP 0.83 70.0 6.24e-01 100.0% 67.3%
4579287 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.82 63.0 3.65e-01 100.0% 9.6%
3251948 375.1.3.2 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP 0.81 68.0 5.88e-01 100.0% 61.7%
4979347 375.1.3.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 0.80 68.0 5.64e-01 100.0% 54.3%
5040368 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 61.0 6.41e-01 84.6% 94.3%
4008953 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 62.0 6.47e-01 100.0% 94.3%
5037997 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 62.0 6.25e-01 89.7% 87.5%
3213738 192.29.1.117 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Ima1_N 0.79 61.0 6.38e-01 84.6% 94.3%
3784601 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.79 65.0 6.23e-01 92.3% 84.4%
3922469 604.1.1.200 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Ima1_N 0.78 62.0 5.51e-01 87.2% 61.8%
3862499 192.29.1.117 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Ima1_N 0.78 61.0 5.47e-01 87.2% 61.8%
4439203 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 58.0 6.00e-01 97.4% 91.4%
3486337 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 61.0 5.45e-01 87.2% 61.8%
5066735 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 62.0 5.75e-01 89.7% 70.0%
3995440 375.1.1.211 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ima1_N 0.77 61.0 6.30e-01 87.2% 97.1%
4019034 375.1.1.22 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD 0.77 58.0 5.84e-01 100.0% 82.5%
3274032 375.1.1.211 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ima1_N 0.75 58.0 5.63e-01 87.2% 75.6%
5034626 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 60.0 5.98e-01 89.7% 92.5%
3271858 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.74 62.0 5.25e-01 94.9% 58.5%
5029687 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 63.0 6.01e-01 94.9% 93.3%
3629733 375.1.1.211 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ima1_N 0.74 57.0 5.17e-01 87.2% 61.8%
4991056 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.73 58.0 5.34e-01 94.9% 80.0%
5030111 375.1.1.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.72 63.0 5.33e-01 100.0% 71.9%
4853382 375.1.1.138 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › IBR_2 0.71 58.0 5.00e-01 92.3% 57.1%
3718984 375.10.1.0 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.71 61.0 5.20e-01 100.0% 63.1%
3498209 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 56.0 4.75e-01 87.2% 54.7%
5059205 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 54.0 5.43e-01 89.7% 92.5%
3506230 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 56.0 3.61e-01 97.4% 40.0%
5036396 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 53.0 5.36e-01 87.2% 87.2%
4981040 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 54.0 5.41e-01 89.7% 89.7%
5027043 375.1.1.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.69 57.0 5.49e-01 94.9% 97.8%
4666101 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 52.0 5.06e-01 100.0% 75.6%
5022494 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 53.0 4.02e-01 89.7% 35.0%
4926870 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 47.0 4.70e-01 74.4% 97.5%
4322207 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 53.0 5.44e-01 100.0% 100.0%
5071927 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 49.0 4.39e-01 79.5% 65.5%
4111189 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 53.0 4.71e-01 97.4% 60.0%
3575430 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 50.0 4.69e-01 84.6% 66.0%
3999619 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 46.0 4.32e-01 79.5% 60.0%
3262469 375.1.1.94 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ZnF_RZ-type 0.65 52.0 5.01e-01 100.0% 93.9%
3699533 2.1.1.42 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.63 50.0 3.18e-01 100.0% 17.6%
4943704 375.12.1.0 few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related 0.63 47.0 4.16e-01 100.0% 53.8%
5034313 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 46.0 4.77e-01 84.6% 94.3%
4515794 375.1.1.11 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27 0.62 49.0 4.38e-01 84.6% 60.0%
5083127 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 44.0 4.53e-01 82.1% 100.0%
4979649 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.60 49.0 2.88e-01 100.0% 21.8%
4103847 101.1.9.83 alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.59 45.0 3.57e-01 100.0% 36.8%
3268723 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 45.0 4.68e-01 87.2% 97.1%
3607308 2498.1.1.14 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.58 46.0 2.66e-01 97.4% 9.3%
5034882 4203.1.1.0 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.58 40.0 3.87e-01 74.4% 91.1%
4029201 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 44.0 4.23e-01 84.6% 73.3%
3484821 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.57 41.0 3.45e-01 76.9% 55.4%
3857437 375.1.1.184 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TOP3B 0.56 42.0 4.26e-01 84.6% 85.0%
3584364 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 42.0 4.12e-01 100.0% 90.0%
3832353 375.1.1.184 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TOP3B 0.56 46.0 3.05e-01 100.0% 28.9%
4947773 70.2.1.5 beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.53 38.0 2.67e-01 84.6% 67.3%
394809 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.52 36.0 3.11e-01 79.5% 79.2%
3581246 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.18e-01 100.0% 41.9%
D2 medium residues 45-83
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.74 61.0 5.55e-01 97.4% 80.4%
2nutA02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.69 52.0 4.54e-01 84.6% 63.9%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.67 52.0 4.52e-01 87.2% 61.3%
2aklA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 52.0 5.15e-01 100.0% 83.7%
2conA00 6.20.210.10 Special › Other non-globular › Herpes Virus-1 › Nin one binding (NOB1), Zn-ribbon-like 0.66 47.0 3.83e-01 84.6% 38.0%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.65 51.0 4.82e-01 89.7% 93.8%
3m7nA03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 42.0 4.35e-01 84.6% 91.2%
1xhbA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 41.0 2.64e-01 92.3% 36.3%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.55 40.0 3.52e-01 92.3% 48.6%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 42.0 3.76e-01 89.7% 75.8%
2drpA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.51 33.0 3.45e-01 74.4% 70.6%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5068970 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.84 68.0 6.87e-01 89.7% 97.4%
4960851 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.83 66.0 6.89e-01 89.7% 100.0%
3678606 375.1.1.212 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_FGT1_2 0.82 65.0 6.75e-01 89.7% 100.0%
5067229 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 64.0 6.13e-01 87.2% 75.6%
5075187 375.1.3.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.80 63.0 5.53e-01 89.7% 58.3%
3825063 1067.1.1.0 few secondary structure elements › pheromone Ep-1 › pheromone Ep-1 › pheromone Ep-1 0.80 63.0 6.51e-01 92.3% 100.0%
3786601 375.1.1.200 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 0.80 63.0 6.46e-01 94.9% 100.0%
3362800 375.1.1.193 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_FGT1_1 0.80 62.0 6.03e-01 89.7% 77.8%
4969277 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 63.0 6.27e-01 89.7% 92.5%
4979347 375.1.3.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 0.77 60.0 5.06e-01 89.7% 50.0%
3606741 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 56.0 5.75e-01 87.2% 97.1%
3514931 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 57.0 5.67e-01 89.7% 87.5%
4929702 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 56.0 5.31e-01 100.0% 78.0%
4122844 375.1.1.213 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TiaS 0.63 47.0 4.76e-01 87.2% 85.0%
5043745 2.1.1.287 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS 0.61 44.0 2.97e-01 84.6% 18.9%
4556132 375.1.1.74 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mu-like_Com 0.58 43.0 4.37e-01 82.1% 97.1%
5039189 2.1.1.287 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS 0.55 40.0 2.84e-01 84.6% 21.3%
4349964 101.1.9.83 alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.52 38.0 3.02e-01 87.2% 34.7%
5059659 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.50 34.0 3.45e-01 71.8% 87.5%