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MN940411.1__QIA28669.1__X__00167

Bact-Vir

MN940411.1__QIA28669.1__X__00167

Identity

Accession:
MN940411 ↗
Kingdom:
phage

Quality

77.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Phage_f2b1

TaxID: 2708592

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-70
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oq1A02 1.10.930.10 Mainly Alpha › Orthogonal Bundle › Syk Kinase; Chain A, domain 2 › Syk Kinase; Chain A, domain 2 0.74 47.0 5.55e-01 70.0% 100.0%
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.64 43.0 4.25e-01 70.0% 81.8%
3oymA01 1.10.340.70 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.63 42.0 3.82e-01 75.7% 51.6%
3bm1A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.60 48.0 3.57e-01 87.1% 68.4%
1q2lA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.59 40.0 2.83e-01 71.4% 35.5%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 40.0 2.96e-01 71.4% 96.0%
4iluA02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.56 41.0 3.63e-01 81.4% 73.0%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 45.0 3.37e-01 92.9% 85.9%
2p6vA00 1.20.120.1110 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain 0.55 37.0 3.35e-01 70.0% 67.0%
5dvwA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 45.0 3.76e-01 95.7% 82.6%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.55 36.0 3.84e-01 71.4% 84.2%
1jt6A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 40.0 3.33e-01 88.6% 63.5%
1o7fA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 38.0 3.05e-01 84.3% 76.8%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589741 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.68 46.0 3.34e-01 71.4% 77.5%
5028733 3721.1.1.1 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 0.67 56.0 5.54e-01 95.7% 85.3%
5034422 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.62 42.0 4.61e-01 72.9% 90.9%
2577269 7103.1.1.1 ↗ alpha arrays › MJ1004, C-terminal domain › MJ1004, C-terminal domain › MJ1004, C-terminal domain › PF31224 0.60 45.0 4.27e-01 82.9% 79.3%
5025050 2488.1.1.1 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.60 46.0 3.24e-01 90.0% 25.7%
3535889 110.1.1.4 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN 0.57 44.0 4.09e-01 84.3% 76.7%
3172621 309.1.1.8 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_M 0.54 42.0 2.92e-01 87.1% 34.9%
3246402 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.52 36.0 3.69e-01 72.9% 98.5%
3969411 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.50 44.0 2.96e-01 100.0% 95.3%