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MN945902.1__QIG61628.1__SEA_DINGER_18__00015

Bact-Vir

MN945902.1__QIG61628.1__SEA_DINGER_18__00015

Identity

Accession:
MN945902 ↗
Kingdom:
phage

Quality

89.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-35_145-282
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25681.2 best Phage_TTP_17 178.7 1.50e-52 100.0% 92.1%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.66 33.0 4.07e-01 81.1% 75.0%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 49.0 5.34e-01 95.3% 94.9%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 38.0 4.12e-01 98.8% 71.4%
3ci0J01 3.10.610.10 Alpha Beta › Roll › Pili subunits › GSPII I/J protein-like 0.56 21.0 2.66e-01 97.6% 54.8%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.55 29.0 3.52e-01 79.9% 77.4%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.55 30.0 3.68e-01 80.5% 84.5%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5078836 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 51.0 6.27e-01 95.3% 99.1%
3943316 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.77 65.0 6.73e-01 97.0% 93.8%
3590380 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 67.0 6.60e-01 98.8% 86.7%
3058416 1.1.5.39 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.76 52.0 5.99e-01 97.0% 92.9%
4929634 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.73 53.0 4.48e-01 98.8% 46.7%
4873215 1.1.13.11 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.71 55.0 5.98e-01 100.0% 97.1%
5003885 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.71 56.0 6.01e-01 100.0% 96.6%
3976188 1.1.13.1 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.71 55.0 5.62e-01 100.0% 83.0%
2101633 1.1.13.1 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.71 55.0 5.53e-01 100.0% 81.4%
4988100 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 50.0 5.75e-01 93.5% 100.0%
3964955 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 62.0 6.42e-01 95.9% 99.4%
2642579 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.70 52.0 5.84e-01 98.2% 100.0%
3581358 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 57.0 5.96e-01 99.4% 95.5%
3502370 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.69 57.0 5.88e-01 97.6% 93.1%
4030848 1.1.13.52 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_1 0.68 58.0 5.95e-01 95.9% 92.0%
4954552 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.68 61.0 6.26e-01 99.4% 100.0%
2832217 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.67 54.0 5.79e-01 100.0% 100.0%
3969448 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 42.0 5.08e-01 85.8% 100.0%
4995819 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 55.0 5.79e-01 95.9% 100.0%
3980535 1.1.13.51 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU 0.64 49.0 5.40e-01 94.7% 100.0%
3059162 1.1.13.30 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.60 43.0 4.87e-01 91.7% 99.2%
3884573 11.1.1.318 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Rb_N 0.59 29.0 3.73e-01 94.1% 83.3%
3943681 1.1.13.47 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.59 49.0 5.16e-01 90.5% 98.7%
5062396 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.58 46.0 4.97e-01 87.6% 99.3%
4994509 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.57 25.0 3.37e-01 95.3% 76.5%
5011023 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.56 25.0 3.38e-01 90.5% 81.2%
4967925 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.55 23.0 3.02e-01 88.2% 67.4%
5075687 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.51 24.0 3.16e-01 97.6% 82.4%
D2 high residues 43-140
PDB
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2waoA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.65 46.0 4.49e-01 100.0% 65.8%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 48.0 4.42e-01 100.0% 62.4%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 56.0 5.30e-01 100.0% 88.4%
2xbzA00 2.60.40.2380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 43.0 3.95e-01 99.0% 56.8%
2ja9A02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.59 39.0 4.16e-01 83.7% 78.6%
2j3rB00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.59 45.0 3.90e-01 82.7% 70.7%
4ydjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 51.0 4.69e-01 100.0% 85.9%
7lfbH01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 51.0 4.90e-01 100.0% 87.2%
5whzH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 50.0 4.73e-01 100.0% 89.4%
1bdyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 40.0 3.73e-01 74.5% 100.0%
1yq5A00 2.60.120.670 Mainly Beta › Sandwich › Jelly Rolls › Minor capsid protein. 0.55 41.0 3.67e-01 80.6% 74.3%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 4.81e-01 99.0% 100.0%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.85e-01 94.9% 78.9%
1pgsA02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.80e-01 100.0% 73.7%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 30.0 3.02e-01 74.5% 56.0%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 30.0 2.75e-01 73.5% 40.9%
1d2oA01 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.51 38.0 3.79e-01 94.9% 74.8%
3wnoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 4.13e-01 100.0% 87.0%
4fkeA03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 4.22e-01 93.9% 94.3%
3fn9A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 39.0 3.37e-01 83.7% 61.6%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 30.0 3.10e-01 74.5% 58.2%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 31.0 3.03e-01 76.5% 53.6%
5f7uA06 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 39.0 3.62e-01 98.0% 65.1%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3759364 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.78 71.0 6.94e-01 96.9% 98.1%
3166067 3019.1.1.7 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Phage_sheath_domII 0.66 60.0 5.87e-01 100.0% 96.2%
3574277 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.64 41.0 4.40e-01 90.8% 75.3%
2083577 3019.1.1.1 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.63 57.0 5.29e-01 100.0% 96.8%
3971791 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 41.0 4.81e-01 100.0% 100.0%
3916385 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.62 52.0 5.15e-01 93.9% 87.6%
3392919 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.61 46.0 4.57e-01 100.0% 77.1%
5038687 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 44.0 4.44e-01 100.0% 75.0%
5075535 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.60 42.0 4.22e-01 100.0% 71.0%
5078855 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.60 41.0 4.60e-01 100.0% 93.3%
4242187 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.59 42.0 4.02e-01 100.0% 63.5%
4403433 11.1.1.11 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Usher 0.59 38.0 4.31e-01 100.0% 91.4%
3902170 10.3.1.2 beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.58 43.0 3.98e-01 100.0% 61.6%
4388283 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.58 40.0 4.52e-01 92.9% 100.0%
3252861 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.57 47.0 3.68e-01 89.8% 44.7%
3495764 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.57 46.0 3.82e-01 89.8% 58.4%
3735235 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 31.0 3.58e-01 75.5% 72.9%
3892939 10.32.1.229 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27640 0.55 41.0 3.69e-01 100.0% 55.7%
3483295 10.3.1.0 beta sandwiches › jelly-roll › TNF-like › TNF-like 0.55 41.0 3.61e-01 100.0% 53.8%
3484974 10.3.1.2 beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.55 41.0 3.66e-01 100.0% 56.1%
5018134 10.1.2.186 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › DUF3344 0.54 49.0 4.39e-01 100.0% 85.2%
3908103 10.3.1.2 beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.54 41.0 3.74e-01 100.0% 60.8%
3193810 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 43.0 3.72e-01 100.0% 54.8%
5038375 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.54 47.0 3.77e-01 99.0% 50.5%
3618777 11.1.1.842 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_C 0.53 40.0 3.91e-01 84.7% 73.4%
3259597 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 40.0 3.39e-01 81.6% 80.6%
3495591 304.20.1.0 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.52 45.0 3.95e-01 94.9% 97.3%
3180910 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 39.0 3.51e-01 100.0% 56.4%
5024520 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 31.0 3.03e-01 75.5% 51.8%
3883934 10.3.1.2 beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.52 40.0 3.35e-01 100.0% 47.6%
3649612 10.32.1.199 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF642 0.52 43.0 3.49e-01 100.0% 46.2%
4660270 4004.1.1.3 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.52 46.0 3.85e-01 100.0% 81.8%
3916306 10.32.1.179 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › NDNF_C 0.52 39.0 3.86e-01 83.7% 75.2%
5012611 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.51 30.0 3.06e-01 74.5% 56.0%
3564504 10.32.1.186 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Androglobin_V 0.51 44.0 3.78e-01 96.9% 70.0%
4946379 4004.1.1.3 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.51 45.0 3.85e-01 100.0% 83.7%
4201960 4004.1.1.3 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.51 45.0 3.81e-01 100.0% 81.2%
4358753 4004.1.1.3 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.50 44.0 3.76e-01 100.0% 79.4%
4934903 4004.1.1.3 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.50 44.0 3.87e-01 100.0% 84.5%
4145033 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 43.0 3.77e-01 95.9% 81.3%
4568883 4004.1.1.3 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.50 44.0 3.72e-01 100.0% 78.0%
3773164 11.1.1.628 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sarcoglycan_2 0.50 43.0 4.29e-01 100.0% 95.0%
4119524 4004.1.1.3 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.50 44.0 3.77e-01 100.0% 82.4%