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MN956515.1__QIQ61330.1__V039C_0052__00052
Bact-VirMN956515.1__QIQ61330.1__V039C_0052__00052
Identity
- Accession:
- MN956515 ↗
- Kingdom:
- phage
Quality
45.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 131-193
Domain cluster:
rep: MK097141.1__AZF88573.1__X__00009__D159-207
D2
high
residues 506-586
D3
medium
residues 195-263
Domain cluster:
rep: MG592537.1__AUR92137.1__NVP1170O_024__00024__D2-70
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wqwA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.63 | 54.0 | 4.03e-01 | 100.0% | 85.6% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.61 | 54.0 | 3.99e-01 | 98.6% | 65.4% |
| 2o95B00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.60 | 53.0 | 3.94e-01 | 98.6% | 65.3% |
| 2kcqA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.57 | 50.0 | 3.89e-01 | 98.6% | 72.5% |
| 3dclA01 | 2.102.30.10 | Mainly Beta › 3-layer Sandwich › tm1086 (SG structure) fold › tm1086 (SG structure) domain | 0.57 | 50.0 | 3.87e-01 | 98.6% | 66.7% |
| 1z7mC00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.56 | 47.0 | 3.19e-01 | 100.0% | 87.4% |
| 5eokA01 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.54 | 40.0 | 3.74e-01 | 81.2% | 75.3% |
| 1jheA00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.54 | 44.0 | 3.81e-01 | 98.6% | 98.4% |
| 2ew0A00 | 3.40.1740.10 | Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like | 0.53 | 37.0 | 2.75e-01 | 72.5% | 89.1% |
| 5jqkA03 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.53 | 47.0 | 3.11e-01 | 100.0% | 32.4% |
| 4ah6A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 44.0 | 3.76e-01 | 92.8% | 86.8% |
| 5iu1B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 42.0 | 3.59e-01 | 87.0% | 53.6% |
| 4s2rQ03 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.52 | 46.0 | 3.05e-01 | 100.0% | 32.0% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 44.0 | 3.93e-01 | 97.1% | 71.0% |
| 2y3vD00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.52 | 44.0 | 3.48e-01 | 98.6% | 87.7% |
| 3lifB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 38.0 | 3.09e-01 | 82.6% | 75.0% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2512672 | 3856.1.2.1 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta | 0.86 | 72.0 | 7.35e-01 | 89.9% | 100.0% |
| 4859120 | 3856.1.2.0 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain | 0.82 | 74.0 | 6.57e-01 | 100.0% | 73.5% |
| 4393394 | 3856.1.2.1 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta | 0.81 | 68.0 | 7.04e-01 | 91.3% | 100.0% |
| 3251055 | 3856.1.2.1 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta | 0.81 | 72.0 | 7.21e-01 | 97.1% | 100.0% |
| 2485645 | 3856.1.2.1 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta | 0.81 | 69.0 | 6.34e-01 | 92.8% | 79.5% |
| 2409669 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.80 | 69.0 | 4.22e-01 | 92.8% | 17.0% |
| 3164979 | 3856.1.2.1 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta | 0.80 | 73.0 | 6.59e-01 | 98.6% | 86.7% |
| 2581318 | 3856.1.2.1 ↗ | beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta | 0.80 | 68.0 | 7.05e-01 | 97.1% | 98.5% |
| 2491358 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.77 | 71.0 | 4.21e-01 | 100.0% | 16.0% |
| 5038074 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.63 | 54.0 | 3.88e-01 | 98.6% | 58.4% |
| 3368864 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.60 | 37.0 | 3.86e-01 | 76.8% | 66.2% |
| 3799844 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.60 | 52.0 | 3.80e-01 | 98.6% | 63.1% |
| 4527641 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.60 | 52.0 | 3.80e-01 | 98.6% | 64.6% |
| 4039199 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.60 | 52.0 | 3.55e-01 | 98.6% | 50.4% |
| 3622767 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.59 | 45.0 | 4.11e-01 | 97.1% | 61.1% |
| 165182 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.59 | 48.0 | 3.73e-01 | 97.1% | 81.7% |
| 3279780 | 2008.1.1.20 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 | 0.59 | 51.0 | 3.67e-01 | 98.6% | 64.0% |
| 4013103 | 2008.1.1.99 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_12 | 0.58 | 49.0 | 3.46e-01 | 97.1% | 78.7% |
| 133840 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.57 | 50.0 | 3.95e-01 | 98.6% | 76.6% |
| 3212241 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.56 | 45.0 | 3.80e-01 | 97.1% | 51.7% |
| 3239884 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.56 | 48.0 | 4.20e-01 | 100.0% | 63.8% |
| 3772934 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.56 | 41.0 | 3.57e-01 | 79.7% | 83.6% |
| 3405122 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.55 | 48.0 | 3.37e-01 | 100.0% | 54.5% |
| 4972514 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.55 | 48.0 | 3.84e-01 | 98.6% | 75.0% |
| 4989202 | 304.45.1.2 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › DUF4416 | 0.55 | 48.0 | 3.69e-01 | 100.0% | 81.9% |
| 3237101 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.54 | 46.0 | 3.84e-01 | 97.1% | 56.8% |
| 3271375 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 47.0 | 3.52e-01 | 98.6% | 86.7% |
| 3214289 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.53 | 47.0 | 4.01e-01 | 100.0% | 60.9% |
| 3288805 | 286.1.1.0 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like | 0.53 | 44.0 | 3.49e-01 | 94.2% | 51.3% |
| 1905936 | 283.1.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24,Peptidase_M24_C | 0.53 | 47.0 | 3.09e-01 | 100.0% | 31.7% |
| 3704901 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.53 | 43.0 | 4.01e-01 | 92.8% | 96.7% |
| 3956124 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.52 | 45.0 | 3.24e-01 | 98.6% | 77.6% |
| 4548340 | 1.1.9.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0179 | 0.52 | 36.0 | 3.61e-01 | 72.5% | 97.1% |
| 3928082 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.50 | 38.0 | 2.67e-01 | 85.5% | 76.1% |
| 5002753 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.50 | 42.0 | 3.97e-01 | 97.1% | 100.0% |
D4
medium
residues 264-347
D5
medium
residues 736-812