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MN988459.1__QIG66801.1__EVB27_132__00131

Bact-Vir

MN988459.1__QIG66801.1__EVB27_132__00131

Identity

Accession:
MN988459 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_TM16

TaxID: 2509755

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-92
PDB
Domain cluster: rep: OQ850971__WLW38174.1__X__00003__D32-114
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4adiA01 2.60.98.30 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Rubella membrane glycoprotein E1, domain 1 0.72 54.0 5.81e-01 84.4% 93.5%
1yy3A02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.71 41.0 4.00e-01 87.8% 51.5%
4k59A00 2.60.40.4380 Mainly Beta › Sandwich › Immunoglobulin-like › Translational regulator CsrA 0.69 46.0 5.41e-01 93.3% 93.9%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 40.0 4.97e-01 93.3% 100.0%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 40.0 4.73e-01 87.8% 91.7%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.65 36.0 4.51e-01 85.6% 90.7%
3u2gA01 2.60.40.4190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 50.0 4.30e-01 83.3% 96.5%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 32.0 4.24e-01 71.1% 93.5%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.68e-01 100.0% 86.3%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 4.39e-01 98.9% 76.2%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 37.0 4.63e-01 85.6% 100.0%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 50.0 4.46e-01 87.8% 99.2%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 48.0 4.38e-01 88.9% 98.4%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 51.0 4.43e-01 96.7% 98.6%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 47.0 4.22e-01 90.0% 91.8%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 47.0 4.21e-01 90.0% 92.6%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 47.0 4.12e-01 90.0% 92.9%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 42.0 4.43e-01 97.8% 86.4%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 50.0 4.18e-01 100.0% 87.2%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 45.0 4.01e-01 88.9% 94.2%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 39.0 4.29e-01 93.3% 88.0%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 4.11e-01 100.0% 91.9%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 41.0 3.72e-01 77.8% 83.5%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 3.97e-01 96.7% 94.3%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 35.0 4.25e-01 85.6% 100.0%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 41.0 4.44e-01 91.1% 94.6%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.55 38.0 4.32e-01 84.4% 100.0%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 36.0 4.23e-01 87.8% 100.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.53e-01 96.7% 100.0%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 38.0 4.11e-01 85.6% 85.9%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 34.0 4.10e-01 84.4% 100.0%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 4.07e-01 77.8% 84.8%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 33.0 4.04e-01 83.3% 100.0%
2k5gA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 47.0 3.77e-01 100.0% 81.7%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 35.0 4.01e-01 85.6% 92.5%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.72e-01 95.6% 84.4%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 3.99e-01 80.0% 95.3%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 3.96e-01 77.8% 95.4%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.83e-01 76.7% 78.0%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.52 42.0 3.76e-01 87.8% 71.0%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 34.0 3.93e-01 81.1% 95.3%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 43.0 3.57e-01 93.3% 78.4%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 34.0 3.73e-01 84.4% 85.7%
1z24A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.55e-01 98.9% 81.0%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.51 42.0 2.95e-01 92.2% 93.1%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 32.0 3.82e-01 82.2% 100.0%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 42.0 3.34e-01 93.3% 87.4%
2r7dA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 32.0 3.88e-01 75.6% 98.3%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 32.0 3.78e-01 78.9% 98.3%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.50 39.0 3.62e-01 86.7% 92.6%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014776 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.84 68.0 7.22e-01 87.8% 96.2%
4942017 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.83 64.0 5.89e-01 81.1% 87.8%
5008207 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.82 66.0 6.99e-01 85.6% 95.0%
5008209 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.80 63.0 6.70e-01 84.4% 98.8%
4958733 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.78 62.0 6.51e-01 84.4% 98.8%
5014673 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 64.0 6.73e-01 87.8% 98.8%
4958477 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.76 62.0 6.21e-01 86.7% 94.4%
3740511 2.1.1.89 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.70 36.0 3.69e-01 84.4% 50.0%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.67 41.0 4.69e-01 91.1% 84.6%
3494671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 30.0 3.85e-01 76.7% 80.0%
3487462 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.64 52.0 4.68e-01 91.1% 98.5%
3496659 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 42.0 4.92e-01 96.7% 100.0%
3480822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 36.0 4.60e-01 87.8% 100.0%
3617175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 36.0 4.46e-01 84.4% 92.7%
3671396 4.1.1.316 ↗ beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.63 44.0 4.85e-01 97.8% 90.4%
4269256 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.62 40.0 4.78e-01 95.6% 100.0%
3925021 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.61 49.0 4.31e-01 87.8% 95.6%
3520059 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.61 48.0 4.46e-01 87.8% 96.7%
3902975 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 40.0 4.75e-01 75.6% 100.0%
3790671 2.1.1.89 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.60 47.0 4.33e-01 83.3% 93.9%
3592754 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 42.0 3.83e-01 72.2% 83.2%
4963580 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.59 47.0 5.03e-01 94.4% 96.2%
3237030 2.1.1.89 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.59 45.0 4.20e-01 83.3% 93.9%
3849311 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 38.0 4.58e-01 87.8% 100.0%
3894563 9.1.1.24 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.58 47.0 4.22e-01 90.0% 96.1%
3222195 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 40.0 4.60e-01 88.9% 98.5%
3624142 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.58 46.0 4.08e-01 90.0% 92.1%
3498357 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 38.0 4.30e-01 90.0% 88.6%
3389706 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 39.0 4.07e-01 76.7% 75.3%
3503771 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 40.0 4.58e-01 92.2% 100.0%
4987320 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 36.0 4.30e-01 76.7% 95.0%
4003123 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 38.0 4.38e-01 90.0% 95.4%
5017215 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 34.0 4.24e-01 75.6% 100.0%
5002450 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 31.0 3.85e-01 82.2% 89.1%
3586203 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 36.0 4.10e-01 82.2% 89.2%
3333322 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.55 42.0 3.64e-01 95.6% 53.3%
3842441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 35.0 4.22e-01 85.6% 98.3%
4399115 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.54 37.0 4.24e-01 78.9% 96.9%
3775595 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 36.0 4.16e-01 91.1% 96.9%
5049461 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 41.0 3.75e-01 84.4% 100.0%
3238303 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 4.29e-01 94.4% 82.7%
3535424 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 37.0 4.07e-01 92.2% 91.4%
4485519 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 37.0 3.47e-01 72.2% 90.0%
3258814 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 38.0 3.66e-01 76.7% 75.2%
3267875 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 38.0 3.74e-01 77.8% 71.0%
3890750 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 4.04e-01 87.8% 82.2%
5009522 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 37.0 2.52e-01 74.4% 90.8%
3930461 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 36.0 3.86e-01 91.1% 86.7%
4161829 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 33.0 3.61e-01 78.9% 80.0%
4218525 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 33.0 3.83e-01 75.6% 93.8%