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MN988459.1__QIG66806.1__EVB27_137__00136
Bact-VirMN988459.1__QIG66806.1__EVB27_137__00136
Identity
- Accession:
- MN988459 ↗
- Kingdom:
- phage
Quality
39.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 85-141
D2
high
residues 608-720
Domain cluster:
rep: MG189906.1__ATS92306.1__DLP05_144__00143__D169-272
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1k8kD01 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.67 | 48.0 | 4.36e-01 | 74.3% | 77.5% |
| 1ry9A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.64 | 51.0 | 4.87e-01 | 85.0% | 82.0% |
| 4on1A01 | 2.40.128.470 | Mainly Beta › Beta Barrel › Lipocalin › | 0.63 | 46.0 | 4.27e-01 | 76.1% | 86.3% |
| 2fm8B00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.62 | 45.0 | 4.37e-01 | 75.2% | 80.8% |
| 3fo5B00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 46.0 | 3.59e-01 | 77.9% | 75.1% |
| 6erkA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 43.0 | 3.84e-01 | 74.3% | 52.2% |
| 3tu3A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.60 | 44.0 | 4.39e-01 | 77.0% | 82.4% |
| 1jyoA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.60 | 47.0 | 4.51e-01 | 83.2% | 81.5% |
| 3ovcA01 | 3.30.200.150 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.60 | 37.0 | 4.56e-01 | 81.4% | 100.0% |
| 1k8kF00 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.58 | 45.0 | 4.03e-01 | 84.1% | 83.2% |
| 3i24B00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.57 | 46.0 | 4.38e-01 | 88.5% | 100.0% |
| 2w4yA00 | 2.40.160.220 | Mainly Beta › Beta Barrel › Porin › | 0.57 | 38.0 | 3.78e-01 | 74.3% | 63.9% |
| 2pmlX01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 39.0 | 3.78e-01 | 70.8% | 79.0% |
| 1j6wA00 | 3.30.1360.80 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) | 0.56 | 45.0 | 4.07e-01 | 89.4% | 95.0% |
| 2fkiA00 | 3.90.1150.30 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.54 | 44.0 | 4.34e-01 | 87.6% | 84.7% |
| 3rbyA02 | 2.40.128.310 | Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain | 0.54 | 40.0 | 4.36e-01 | 84.1% | 92.6% |
| 3w3sA01 | 3.30.70.1920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 43.0 | 3.83e-01 | 88.5% | 97.6% |
| 1af5A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.53 | 40.0 | 3.93e-01 | 81.4% | 84.1% |
| 2aaaA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 38.0 | 4.01e-01 | 85.0% | 86.3% |
| 1k0eB00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.52 | 46.0 | 3.16e-01 | 98.2% | 78.0% |
| 1hn0A04 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.52 | 41.0 | 4.01e-01 | 85.8% | 95.9% |
| 4m1xD00 | 3.30.1360.240 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.52 | 31.0 | 3.74e-01 | 87.6% | 94.4% |
| 2zvfA02 | 3.10.310.40 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.51 | 39.0 | 4.05e-01 | 85.0% | 86.8% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4629064 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.69 | 54.0 | 4.75e-01 | 82.3% | 77.0% |
| 4187379 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.66 | 41.0 | 4.04e-01 | 87.6% | 57.5% |
| 4464027 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.66 | 51.0 | 5.15e-01 | 83.2% | 95.7% |
| 3247651 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 53.0 | 5.61e-01 | 92.9% | 98.0% |
| 3822351 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.65 | 45.0 | 4.90e-01 | 72.6% | 94.7% |
| 4875201 | 3338.1.1.1 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Fragilysin-3 prodomain › Fragilysin-3 prodomain › fragilysinNterm | 0.64 | 46.0 | 4.34e-01 | 75.2% | 94.2% |
| 2999532 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.64 | 44.0 | 4.72e-01 | 72.6% | 82.7% |
| 3252765 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.63 | 41.0 | 3.92e-01 | 87.6% | 54.8% |
| 1309460 | 3338.1.1.1 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Fragilysin-3 prodomain › Fragilysin-3 prodomain › fragilysinNterm | 0.63 | 46.0 | 4.23e-01 | 76.1% | 83.9% |
| 3248782 | 330.3.1.2 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › MRP-S28 | 0.63 | 47.0 | 4.80e-01 | 78.8% | 91.8% |
| 2400396 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.62 | 44.0 | 4.70e-01 | 74.3% | 84.8% |
| 4023304 | 241.6.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits | 0.62 | 47.0 | 4.14e-01 | 82.3% | 86.9% |
| 4988258 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.61 | 47.0 | 4.64e-01 | 81.4% | 99.2% |
| 3301493 | 11.1.1.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON | 0.61 | 55.0 | 4.85e-01 | 99.1% | 100.0% |
| 3928940 | 241.6.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › P34-Arc | 0.61 | 46.0 | 4.12e-01 | 81.4% | 80.0% |
| 4029635 | 241.6.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits | 0.61 | 47.0 | 4.46e-01 | 83.2% | 94.2% |
| 4990838 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.60 | 48.0 | 4.90e-01 | 85.8% | 94.5% |
| 1566648 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.60 | 42.0 | 4.50e-01 | 74.3% | 84.0% |
| 5028231 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.59 | 39.0 | 3.98e-01 | 77.0% | 68.1% |
| 3605150 | 241.6.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits | 0.59 | 46.0 | 4.01e-01 | 84.1% | 84.6% |
| 3727965 | 4955.1.1.8 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › AtuA_ferredoxin | 0.58 | 48.0 | 3.71e-01 | 88.5% | 88.2% |
| 3498107 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 48.0 | 3.52e-01 | 90.3% | 96.0% |
| 3188147 | 4955.1.1.8 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › AtuA_ferredoxin | 0.57 | 48.0 | 4.10e-01 | 91.2% | 99.5% |
| 135591 | 265.1.1.4 ↗ | a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › PhiCb5_coat | 0.57 | 38.0 | 3.78e-01 | 74.3% | 63.9% |
| 4569249 | 9.14.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 | 0.57 | 42.0 | 4.66e-01 | 83.2% | 96.7% |
| 5033087 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.56 | 45.0 | 4.63e-01 | 86.7% | 93.6% |
| 3353115 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.56 | 42.0 | 3.23e-01 | 78.8% | 78.1% |
| 3604520 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.56 | 45.0 | 3.44e-01 | 87.6% | 68.5% |
| 5053873 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.55 | 44.0 | 4.60e-01 | 85.0% | 95.2% |
| 3582023 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.55 | 41.0 | 3.89e-01 | 82.3% | 64.3% |
| 3507452 | 206.1.2.4 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin | 0.55 | 44.0 | 3.06e-01 | 87.6% | 50.1% |
| 4439836 | 7053.1.1.1 ↗ | a+b complex topology › oligomerization domain of PprA › oligomerization domain of PprA › oligomerization domain of PprA › PF29826 | 0.54 | 44.0 | 3.79e-01 | 87.6% | 88.9% |
| 3167013 | 9.14.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 | 0.54 | 40.0 | 4.38e-01 | 83.2% | 93.6% |
| 2458379 | 12.1.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Suc_Porlyase_C | 0.54 | 32.0 | 3.99e-01 | 84.1% | 95.8% |
| 1291695 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.54 | 44.0 | 3.17e-01 | 91.2% | 89.0% |
| 3973859 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.54 | 45.0 | 4.14e-01 | 91.2% | 94.5% |
| 3599877 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.54 | 48.0 | 3.86e-01 | 97.3% | 89.3% |
| 1105421 | 12.1.1.14 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › A_amylase_dom_C | 0.53 | 39.0 | 4.13e-01 | 85.0% | 91.7% |
| 3270736 | 330.3.1.1 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 | 0.53 | 38.0 | 3.76e-01 | 82.3% | 69.4% |
| 5068145 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.53 | 43.0 | 3.42e-01 | 89.4% | 54.4% |
| 4023928 | 330.3.1.1 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 | 0.52 | 41.0 | 3.88e-01 | 84.1% | 69.6% |
| 2138994 | 5.1.3.25 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid | 0.52 | 44.0 | 3.27e-01 | 92.0% | 48.1% |
| 1320675 | 304.157.1.1 ↗ | a+b two layers › Alpha-beta plaits › uncharacterized protein 201phi2-1p060 › uncharacterized protein 201phi2-1p060 › DUF6837 | 0.52 | 32.0 | 3.75e-01 | 87.6% | 93.2% |
| 3364229 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.51 | 44.0 | 3.18e-01 | 92.0% | 48.7% |
| 4222799 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.51 | 40.0 | 3.57e-01 | 82.3% | 74.2% |
| 3470254 | 330.3.1.1 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 | 0.51 | 40.0 | 3.48e-01 | 83.2% | 60.0% |
D3
medium
residues 554-593