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MN988465.1__QIG67133.1__EVB34_028__00028
Bact-VirMN988465.1__QIG67133.1__EVB34_028__00028
Identity
- Accession:
- MN988465 ↗
- Kingdom:
- phage
Quality
83.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-48
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lmoA00 | 1.10.132.70 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.63 | 45.0 | 2.88e-01 | 77.1% | 70.9% |
| 1eigA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 50.0 | 4.48e-01 | 100.0% | 89.0% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 37.0 | 2.85e-01 | 77.1% | 27.5% |
| 2zjrG00 | 3.90.1180.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 | 0.59 | 42.0 | 3.14e-01 | 81.2% | 29.6% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.58 | 41.0 | 3.95e-01 | 77.1% | 74.5% |
| 1zbdB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 37.0 | 2.97e-01 | 77.1% | 34.1% |
| 2p9bA03 | 3.40.50.10910 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Amidohydrolase | 0.54 | 37.0 | 2.77e-01 | 72.9% | 54.8% |
| 4zyaB00 | 3.30.1910.20 | Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain | 0.54 | 38.0 | 3.36e-01 | 77.1% | 96.1% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 38.0 | 3.03e-01 | 75.0% | 86.2% |
| 4hv0C00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.53 | 37.0 | 3.13e-01 | 77.1% | 77.5% |
| 3oa5B02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 45.0 | 2.65e-01 | 100.0% | 42.7% |
| 2cs7A00 | 3.10.50.90 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.52 | 37.0 | 3.67e-01 | 81.2% | 90.9% |
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.51 | 35.0 | 3.38e-01 | 77.1% | 64.5% |
| 2e5vA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 40.0 | 2.61e-01 | 95.8% | 76.3% |
| 5kd5A01 | 1.10.390.30 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Peptidase M60, enhancin-like domain 3 | 0.51 | 40.0 | 2.86e-01 | 95.8% | 70.4% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3309865 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.63 | 48.0 | 4.79e-01 | 91.7% | 84.0% |
| 3233807 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.58 | 46.0 | 4.20e-01 | 95.8% | 94.3% |
| 3688034 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.57 | 46.0 | 3.76e-01 | 95.8% | 62.0% |
| 3513922 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.57 | 41.0 | 4.13e-01 | 85.4% | 80.0% |
| 3598442 | 376.1.1.78 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Zf_2nd_IFT121 | 0.55 | 42.0 | 4.28e-01 | 85.4% | 100.0% |
| 3697056 | 376.1.3.25 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD-1st_NSD | 0.55 | 41.0 | 3.91e-01 | 87.5% | 70.0% |
| 3940660 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.54 | 47.0 | 2.63e-01 | 97.9% | 27.4% |
| 5035493 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.54 | 38.0 | 2.96e-01 | 75.0% | 37.1% |
| 3818617 | 376.1.1.103 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_Vps41 | 0.54 | 38.0 | 3.69e-01 | 77.1% | 74.5% |
| 3268541 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.53 | 47.0 | 3.04e-01 | 100.0% | 73.6% |
| 3574056 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.52 | 44.0 | 2.82e-01 | 100.0% | 93.6% |
| 3613214 | 3609.1.1.0 ↗ | alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain | 0.52 | 41.0 | 2.71e-01 | 100.0% | 35.2% |
| 3706689 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.52 | 37.0 | 3.21e-01 | 75.0% | 66.7% |
| 4376273 | 2.14.1.1 ↗ | beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC | 0.52 | 43.0 | 3.65e-01 | 100.0% | 70.0% |
| 3414136 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.50 | 43.0 | 3.11e-01 | 100.0% | 40.0% |
| 3178263 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.50 | 40.0 | 2.51e-01 | 93.8% | 31.9% |