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MN988468.1__QIG67297.1__EVB37_061__00060
Bact-VirMN988468.1__QIG67297.1__EVB37_061__00060
Identity
- Accession:
- MN988468 ↗
- Kingdom:
- phage
Quality
79.1
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-70
Domain cluster:
rep: MH729379.1__AXY81274.1__AVP_158__00158__D2-65
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17764.7 best | PriA_3primeBD | 25.5 | 1.30e-05 | 96.8% | 49.0% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2d7eA01 | 3.40.1440.60 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain | 0.90 | 66.0 | 5.73e-01 | 77.4% | 57.8% |
| 5i7pA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.67 | 44.0 | 4.89e-01 | 74.2% | 87.5% |
| 4o1sA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.63 | 44.0 | 3.19e-01 | 72.6% | 51.8% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 42.0 | 3.67e-01 | 71.0% | 78.4% |
| 2jmzA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.60 | 51.0 | 3.79e-01 | 96.8% | 51.8% |
| 2napA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.60 | 47.0 | 3.94e-01 | 87.1% | 87.7% |
| 1qcsA02 | 3.10.330.10 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.59 | 46.0 | 3.91e-01 | 87.1% | 80.0% |
| 7bobA02 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.58 | 44.0 | 3.12e-01 | 83.9% | 63.3% |
| 2waaA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 38.0 | 3.16e-01 | 71.0% | 85.4% |
| 2wyrB02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.56 | 48.0 | 4.40e-01 | 100.0% | 97.6% |
| 1wlfA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.55 | 41.0 | 3.82e-01 | 83.9% | 84.5% |
| 2iv2X04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.55 | 49.0 | 4.21e-01 | 100.0% | 97.0% |
| 3d30A01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.55 | 46.0 | 3.93e-01 | 96.8% | 84.3% |
| 1pxfA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 48.0 | 3.96e-01 | 100.0% | 59.5% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.54 | 45.0 | 4.60e-01 | 100.0% | 96.8% |
| 1jheA00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.53 | 44.0 | 3.53e-01 | 91.9% | 87.1% |
| 7w6yA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.53 | 42.0 | 3.91e-01 | 88.7% | 96.3% |
| 2hgaA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.53 | 41.0 | 3.75e-01 | 85.5% | 83.5% |
| 3h41A02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 40.0 | 3.92e-01 | 85.5% | 95.6% |
| 4o06A00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.52 | 37.0 | 3.18e-01 | 74.2% | 76.5% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 44.0 | 4.24e-01 | 98.4% | 94.6% |
| 1f53A00 | 2.60.20.30 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › | 0.52 | 36.0 | 3.29e-01 | 96.8% | 53.6% |
| 6zgqA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.51 | 42.0 | 3.29e-01 | 96.8% | 63.3% |
| 1ay9A00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.51 | 42.0 | 3.48e-01 | 90.3% | 67.6% |
| 1z5hA03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 34.0 | 3.34e-01 | 71.0% | 100.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032331 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.89 | 84.0 | 6.62e-01 | 100.0% | 61.7% |
| 2392036 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.88 | 82.0 | 6.56e-01 | 100.0% | 57.5% |
| 4554209 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.88 | 81.0 | 6.57e-01 | 100.0% | 56.4% |
| 4674798 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.86 | 81.0 | 6.49e-01 | 100.0% | 60.9% |
| 4421311 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.86 | 79.0 | 6.43e-01 | 100.0% | 58.2% |
| 3954416 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.86 | 71.0 | 5.80e-01 | 87.1% | 53.3% |
| 4083034 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.86 | 79.0 | 6.40e-01 | 100.0% | 63.6% |
| 3385437 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.85 | 76.0 | 6.39e-01 | 100.0% | 60.0% |
| 3838774 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.85 | 73.0 | 6.04e-01 | 100.0% | 55.2% |
| 3970095 | 3430.1.1.0 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain | 0.84 | 78.0 | 6.22e-01 | 100.0% | 58.3% |
| 4486406 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.82 | 75.0 | 6.12e-01 | 100.0% | 58.2% |
| 4254576 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.82 | 75.0 | 6.24e-01 | 98.4% | 64.0% |
| 3601841 | 327.13.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system | 0.81 | 76.0 | 5.27e-01 | 100.0% | 35.0% |
| 3716714 | 327.13.1.8 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › PSP1 | 0.81 | 75.0 | 5.19e-01 | 100.0% | 39.3% |
| 3964437 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.80 | 73.0 | 5.97e-01 | 100.0% | 57.3% |
| 5079674 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.65 | 47.0 | 4.47e-01 | 77.4% | 77.3% |
| 5000887 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.63 | 49.0 | 3.94e-01 | 87.1% | 68.5% |
| 5069810 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.62 | 51.0 | 4.73e-01 | 91.9% | 88.7% |
| 5037939 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.61 | 51.0 | 3.74e-01 | 90.3% | 50.3% |
| 5066224 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.61 | 52.0 | 4.54e-01 | 91.9% | 84.4% |
| 5067286 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.60 | 50.0 | 4.40e-01 | 90.3% | 83.1% |
| 4952899 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 44.0 | 4.10e-01 | 80.6% | 81.2% |
| 3492327 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.59 | 46.0 | 3.94e-01 | 87.1% | 81.0% |
| 5014946 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.58 | 48.0 | 3.73e-01 | 90.3% | 60.0% |
| 5065747 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.58 | 48.0 | 4.22e-01 | 90.3% | 82.2% |
| 3273202 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.58 | 42.0 | 3.77e-01 | 83.9% | 80.0% |
| 4936167 | 75.1.1.0 ↗ | beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like | 0.56 | 47.0 | 3.68e-01 | 98.4% | 43.8% |
| 33 | 1.1.2.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PEX-2N | 0.55 | 41.0 | 3.82e-01 | 83.9% | 84.5% |
| 3964422 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.55 | 45.0 | 3.35e-01 | 90.3% | 83.7% |
| 4072878 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.55 | 47.0 | 4.39e-01 | 100.0% | 88.7% |
| 5037727 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.54 | 47.0 | 4.25e-01 | 100.0% | 95.3% |
| 4200338 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.54 | 47.0 | 3.98e-01 | 100.0% | 96.2% |
| 3411351 | 382.1.1.14 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF753 | 0.53 | 32.0 | 3.09e-01 | 87.1% | 49.3% |
| 3385821 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.53 | 46.0 | 4.32e-01 | 100.0% | 93.8% |
| 4989928 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.53 | 45.0 | 3.72e-01 | 98.4% | 93.3% |
| 3930525 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.50 | 36.0 | 2.88e-01 | 79.0% | 80.0% |