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MN988472.1__QIG67528.1__EVB41_063__00063

Bact-Vir

MN988472.1__QIG67528.1__EVB41_063__00063

Identity

Accession:
MN988472 ↗
Kingdom:
phage

Quality

72.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 81-147
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.70 48.0 3.65e-01 71.6% 39.6%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.68 48.0 3.98e-01 73.1% 42.1%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 49.0 4.02e-01 77.6% 99.2%
1skoA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.66 45.0 3.77e-01 73.1% 40.3%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.65 41.0 3.99e-01 73.1% 56.6%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.64 55.0 5.10e-01 100.0% 81.8%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 47.0 3.77e-01 79.1% 97.8%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 43.0 2.77e-01 70.1% 37.5%
3tw6D02 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.63 43.0 4.13e-01 70.1% 75.0%
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.63 54.0 4.55e-01 100.0% 90.1%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.63 43.0 3.56e-01 70.1% 77.0%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 50.0 3.75e-01 86.6% 81.1%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 46.0 3.69e-01 79.1% 98.5%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 42.0 3.44e-01 70.1% 57.4%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 46.0 3.63e-01 92.5% 37.9%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 45.0 2.86e-01 77.6% 79.2%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 49.0 4.04e-01 89.6% 62.6%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 45.0 3.72e-01 79.1% 98.4%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.61 49.0 3.40e-01 88.1% 79.6%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 49.0 3.89e-01 88.1% 60.7%
3besR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 41.0 3.83e-01 70.1% 85.5%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 48.0 4.92e-01 100.0% 90.9%
3picA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 43.0 2.79e-01 82.1% 24.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.65e-01 95.5% 87.7%
2chcC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 49.0 3.87e-01 100.0% 85.5%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 39.0 3.44e-01 70.1% 79.8%
1o17D02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.57 47.0 3.38e-01 100.0% 75.4%
1efpB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 47.0 3.18e-01 89.6% 54.9%
2r4iA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 3.83e-01 91.0% 93.5%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 38.0 3.46e-01 70.1% 82.2%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.73e-01 92.5% 58.2%
3sd2A01 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 38.0 3.64e-01 70.1% 88.3%
3t1oA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 46.0 3.49e-01 100.0% 87.5%
3nemA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 41.0 3.54e-01 79.1% 90.5%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 44.0 4.35e-01 91.0% 98.6%
1h8mA00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.55 46.0 3.74e-01 98.5% 90.7%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 40.0 3.41e-01 79.1% 100.0%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.54 36.0 3.33e-01 83.6% 51.7%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.20e-01 73.1% 92.0%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.54 45.0 3.66e-01 95.5% 83.7%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 40.0 3.40e-01 80.6% 100.0%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 4.06e-01 89.6% 83.9%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 42.0 4.11e-01 92.5% 92.3%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 41.0 3.61e-01 86.6% 53.7%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 44.0 3.99e-01 98.5% 76.3%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.95e-01 83.6% 83.6%
2bhzA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 36.0 3.55e-01 71.6% 97.2%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 46.0 4.05e-01 100.0% 93.0%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.52 42.0 3.20e-01 100.0% 86.1%
3dxpA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 41.0 3.75e-01 88.1% 95.7%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.52 37.0 3.29e-01 77.6% 50.5%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 44.0 3.46e-01 94.0% 92.1%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.52 41.0 3.56e-01 91.0% 58.0%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.51 44.0 3.82e-01 95.5% 63.5%
5b7gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 42.0 2.96e-01 97.0% 93.6%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 37.0 3.11e-01 79.1% 89.5%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 42.0 2.87e-01 98.5% 82.2%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.51 42.0 3.44e-01 100.0% 50.0%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5047185 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 46.0 3.68e-01 73.1% 32.8%
5005811 3414.1.1.0 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.71 46.0 4.40e-01 79.1% 56.2%
4969523 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.69 47.0 5.10e-01 71.6% 87.0%
5043790 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.69 49.0 3.90e-01 73.1% 38.3%
5072591 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 46.0 3.84e-01 71.6% 40.9%
3603559 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.67 47.0 3.99e-01 76.1% 44.5%
4946587 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 44.0 3.65e-01 73.1% 36.2%
5050348 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.66 46.0 3.69e-01 73.1% 36.3%
4926979 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 46.0 3.90e-01 74.6% 43.5%
5049758 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.65 46.0 3.57e-01 73.1% 36.6%
3313678 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 44.0 3.49e-01 71.6% 33.6%
3769483 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 48.0 3.92e-01 79.1% 100.0%
4034138 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.64 56.0 4.54e-01 100.0% 81.2%
5078587 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.64 44.0 3.62e-01 73.1% 37.7%
4950038 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.63 53.0 5.11e-01 100.0% 82.5%
5072371 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 42.0 3.74e-01 71.6% 47.0%
3707878 5.1.2.33 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.62 53.0 3.45e-01 92.5% 47.9%
5081796 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.62 42.0 3.09e-01 85.1% 27.1%
4570530 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.62 51.0 4.42e-01 91.0% 91.3%
4538358 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.62 40.0 3.37e-01 76.1% 38.3%
5050910 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 44.0 3.67e-01 73.1% 43.5%
4952060 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 46.0 4.82e-01 83.6% 91.7%
1148074 3400.1.1.1 a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24 0.61 42.0 2.97e-01 71.6% 55.4%
3233889 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.61 41.0 2.79e-01 70.1% 23.0%
4402384 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.61 47.0 3.51e-01 83.6% 69.1%
None 0.60 47.0 2.95e-01 83.6% 33.0%
3241311 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 41.0 3.01e-01 71.6% 35.3%
3386971 3675.1.1.0 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.60 45.0 3.65e-01 86.6% 41.5%
4679943 223.2.1.19 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.59 42.0 3.24e-01 74.6% 31.5%
4887360 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 36.0 3.82e-01 74.6% 68.3%
3837990 3675.1.1.0 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.59 45.0 3.61e-01 86.6% 41.5%
4963351 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 42.0 3.49e-01 76.1% 65.0%
3370663 896.1.1.1 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.58 40.0 4.20e-01 73.1% 81.4%
3387994 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.57 44.0 4.19e-01 83.6% 76.2%
4031110 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 3.84e-01 98.5% 49.6%
4116346 3675.1.1.0 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.56 42.0 3.29e-01 85.1% 37.5%
3789432 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 2.88e-01 97.0% 20.8%
5074857 223.2.1.59 a+b three layers › Profilin-like › profilin-like › profilin-like › Roc 0.55 46.0 3.10e-01 100.0% 45.5%
3832602 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.55 48.0 4.09e-01 98.5% 69.1%
3980114 3860.1.1.158 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.54 47.0 3.61e-01 97.0% 49.3%
3624708 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.53 39.0 3.16e-01 79.1% 69.6%
3997015 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.53 38.0 3.14e-01 77.6% 71.5%
3932751 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.53 40.0 3.30e-01 83.6% 43.1%
5036498 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.53 37.0 3.60e-01 83.6% 66.7%
4937908 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.52 42.0 3.33e-01 92.5% 40.5%
4052768 3675.1.1.0 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.52 39.0 3.13e-01 83.6% 40.0%
5044629 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 44.0 3.82e-01 100.0% 94.8%
4188283 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 42.0 3.97e-01 86.6% 90.0%
3230925 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.52 38.0 3.19e-01 82.1% 41.5%
3385764 4954.1.1.0 a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit 0.52 42.0 4.02e-01 85.1% 94.7%
4995145 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 39.0 3.72e-01 100.0% 69.4%
3925891 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 3.92e-01 94.0% 74.4%
4927889 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.51 41.0 3.98e-01 92.5% 78.7%