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MN988486.1__QIG67970.1__EVB55_035__00035
Bact-VirMN988486.1__QIG67970.1__EVB55_035__00035
Identity
- Accession:
- MN988486 ↗
- Kingdom:
- phage
Quality
76.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pootjesviridae›
Trinifflemingvirus›
Rhizobium_phage_RHph_Y68
TaxID: 2509787
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-57
Domain cluster:
rep: NC_070888.1__YP_010662459.1__PP939_gp051__00051__D3-55
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c30A02 | 2.20.20.100 | Mainly Beta › Single Sheet › Anthopleurin-A › LuxQ periplasmic domain, C-terminal subdomain | 0.60 | 40.0 | 3.86e-01 | 70.9% | 81.2% |
| 3q6bA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.58 | 41.0 | 3.78e-01 | 76.4% | 97.3% |
| 5uayA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.55 | 36.0 | 3.23e-01 | 92.7% | 45.1% |
| 4bjjA00 | 3.30.200.160 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › TFIIIC, subcomplex tauA, subunit Sfc1, barrel domain | 0.54 | 38.0 | 3.26e-01 | 78.2% | 87.7% |
| 3wj2B00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 40.0 | 2.61e-01 | 85.5% | 82.7% |
| 7n0eB02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.54 | 43.0 | 3.54e-01 | 100.0% | 61.5% |
| 4l7aA00 | 3.40.390.70 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › | 0.53 | 43.0 | 2.90e-01 | 100.0% | 39.8% |
| 1usyC00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 43.0 | 2.88e-01 | 100.0% | 96.4% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 43.0 | 3.19e-01 | 100.0% | 47.9% |
| 1kt8A01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.51 | 41.0 | 2.99e-01 | 100.0% | 41.0% |
| 5l2pA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 38.0 | 2.48e-01 | 89.1% | 82.0% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4939611 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.64 | 44.0 | 3.30e-01 | 72.7% | 62.8% |
| 4944896 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.61 | 41.0 | 3.20e-01 | 70.9% | 53.9% |
| 4031358 | 3070.1.1.18 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › PF26674 | 0.61 | 45.0 | 3.83e-01 | 81.8% | 95.8% |
| 3281177 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.60 | 47.0 | 3.32e-01 | 87.3% | 97.8% |
| 4380775 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.58 | 48.0 | 3.42e-01 | 100.0% | 73.5% |
| 3253973 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 43.0 | 2.99e-01 | 100.0% | 26.5% |
| 3699663 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.56 | 40.0 | 2.73e-01 | 76.4% | 29.0% |
| 4677028 | 314.1.1.1 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 | 0.56 | 40.0 | 2.52e-01 | 81.8% | 56.0% |
| 3798153 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 38.0 | 3.08e-01 | 74.5% | 34.2% |
| 1831278 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.54 | 38.0 | 3.57e-01 | 98.2% | 61.2% |
| 3231335 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.52 | 39.0 | 2.86e-01 | 90.9% | 36.4% |
| 3674451 | 294.1.1.1 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › potato_inhibit | 0.52 | 36.0 | 3.51e-01 | 98.2% | 63.1% |
| 3987761 | 2498.1.1.1 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M10 | 0.52 | 40.0 | 2.99e-01 | 87.3% | 83.1% |
| 3715056 | 207.1.1.24 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 | 0.52 | 38.0 | 2.64e-01 | 90.9% | 20.0% |
| 3392142 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.51 | 29.0 | 2.95e-01 | 83.6% | 45.5% |
| 3272106 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.51 | 42.0 | 3.17e-01 | 100.0% | 80.6% |
| 3818549 | 59.1.1.2 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RNA_pol_Rpc4 | 0.51 | 41.0 | 3.50e-01 | 98.2% | 87.6% |
| 4966859 | 304.51.1.8 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_C | 0.51 | 34.0 | 3.13e-01 | 70.9% | 70.7% |
| 3968019 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.51 | 40.0 | 2.62e-01 | 85.5% | 33.6% |
| 4928781 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.51 | 41.0 | 2.60e-01 | 100.0% | 47.3% |
| 3249147 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.51 | 38.0 | 2.71e-01 | 83.6% | 38.4% |