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MN988486.1__QIG67971.1__EVB55_036__00036

Bact-Vir

MN988486.1__QIG67971.1__EVB55_036__00036

Identity

Accession:
MN988486 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-62
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.72 55.0 3.87e-01 83.6% 32.7%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.35e-01 88.5% 83.1%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.67 57.0 4.54e-01 95.1% 86.3%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 49.0 3.44e-01 83.6% 85.7%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.64 55.0 4.59e-01 100.0% 61.1%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 45.0 3.82e-01 77.0% 87.0%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 44.0 3.82e-01 77.0% 77.0%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 43.0 3.39e-01 75.4% 88.3%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.61 44.0 3.51e-01 80.3% 66.7%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.61 51.0 4.44e-01 100.0% 89.1%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 41.0 3.35e-01 72.1% 72.2%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 41.0 3.36e-01 72.1% 75.0%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 47.0 4.02e-01 88.5% 99.1%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.51e-01 85.2% 82.4%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 40.0 2.89e-01 70.5% 76.5%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 41.0 3.25e-01 73.8% 75.5%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 42.0 3.48e-01 77.0% 82.5%
2hu9A01 2.20.25.270 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 40.0 4.09e-01 72.1% 83.6%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.21e-01 95.1% 89.2%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 42.0 3.66e-01 78.7% 74.8%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 41.0 3.56e-01 78.7% 73.6%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 49.0 4.12e-01 95.1% 90.6%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.39e-01 82.0% 94.5%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 40.0 3.49e-01 78.7% 72.5%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 44.0 3.81e-01 90.2% 100.0%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 45.0 3.89e-01 93.4% 99.0%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 42.0 3.32e-01 80.3% 42.9%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 46.0 4.47e-01 95.1% 100.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.83e-01 100.0% 83.9%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 44.0 2.76e-01 95.1% 17.3%
3wbiA04 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 45.0 3.51e-01 93.4% 69.0%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 46.0 4.10e-01 100.0% 100.0%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 46.0 3.26e-01 100.0% 87.7%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 3.23e-01 83.6% 42.9%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 37.0 2.93e-01 73.8% 68.2%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.34e-01 78.7% 87.3%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 44.0 3.74e-01 91.8% 98.1%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.16e-01 78.7% 81.2%
1a8pA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 44.0 3.97e-01 98.4% 97.9%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 43.0 3.77e-01 93.4% 98.0%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 42.0 3.16e-01 83.6% 39.6%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.54 38.0 3.80e-01 75.4% 86.2%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 47.0 3.79e-01 100.0% 73.8%
2wyrB02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.54 42.0 3.81e-01 86.9% 100.0%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 37.0 2.63e-01 73.8% 94.7%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 42.0 2.89e-01 83.6% 35.0%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 41.0 3.15e-01 83.6% 38.0%
1dleB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 44.0 3.51e-01 100.0% 78.9%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.74e-01 95.1% 96.1%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 43.0 3.92e-01 98.4% 98.9%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.53 38.0 2.34e-01 80.3% 29.5%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 37.0 2.36e-01 75.4% 99.7%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.52 43.0 3.07e-01 100.0% 71.6%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 44.0 3.80e-01 100.0% 66.3%
6m3yA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.19e-01 82.0% 47.8%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 36.0 3.19e-01 78.7% 72.2%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.35e-01 98.4% 84.6%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 38.0 3.12e-01 83.6% 47.7%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.13e-01 82.0% 86.0%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 42.0 3.39e-01 95.1% 60.5%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4009281 219.1.1.65 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.73 60.0 5.08e-01 93.4% 61.9%
5080336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 58.0 5.72e-01 90.2% 95.3%
5034040 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.69e-01 83.6% 94.5%
5006274 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.68 59.0 4.58e-01 100.0% 61.4%
3480564 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 49.0 3.79e-01 78.7% 82.9%
3774692 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.67 54.0 5.04e-01 93.4% 88.7%
4958339 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.66 57.0 4.75e-01 100.0% 87.3%
182106 220.1.1.46 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.66 48.0 3.71e-01 78.7% 80.6%
3712782 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 50.0 4.63e-01 83.6% 70.0%
3596066 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 48.0 3.85e-01 80.3% 75.2%
3408330 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 57.0 4.87e-01 100.0% 68.0%
3937774 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 47.0 3.77e-01 78.7% 73.6%
3471771 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 48.0 5.03e-01 83.6% 100.0%
3390005 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.64 47.0 3.73e-01 80.3% 77.0%
3834563 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 48.0 4.45e-01 83.6% 81.2%
3236689 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 51.0 5.32e-01 100.0% 100.0%
3373330 4.1.1.337 beta barrels › SH3 › SH3 › SH3 › CSD_RNase_II 0.64 49.0 4.61e-01 85.2% 77.3%
3883161 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 54.0 4.83e-01 98.4% 70.0%
3276134 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 46.0 3.71e-01 78.7% 64.8%
3417150 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 44.0 3.34e-01 77.0% 57.1%
3720410 220.1.1.57 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.63 45.0 3.58e-01 78.7% 68.1%
3781470 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 45.0 3.24e-01 78.7% 48.6%
3607724 220.1.1.92 beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.62 44.0 3.63e-01 80.3% 74.6%
5077562 4.1.2.2 beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 0.62 47.0 4.49e-01 86.9% 82.7%
3629315 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 45.0 3.28e-01 80.3% 61.6%
3248246 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 45.0 3.60e-01 78.7% 60.8%
5072499 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.62 46.0 3.29e-01 83.6% 86.0%
3339169 4.1.1.415 beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.61 53.0 4.82e-01 100.0% 97.6%
3222051 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 5.01e-01 95.1% 93.8%
3621943 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 43.0 3.51e-01 78.7% 58.5%
3514467 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 44.0 3.56e-01 80.3% 65.4%
3213725 1.1.17.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.60 51.0 3.42e-01 100.0% 77.4%
4001211 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 43.0 4.04e-01 78.7% 66.7%
3869235 2007.5.1.21 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › NXPE4_C 0.59 42.0 2.66e-01 75.4% 18.8%
5032178 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 51.0 3.44e-01 96.7% 77.0%
3337318 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 41.0 3.28e-01 75.4% 76.4%
4947401 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 41.0 3.15e-01 73.8% 86.5%
3999725 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.58e-01 98.4% 71.8%
4237287 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.58 41.0 3.38e-01 77.0% 68.3%
3171144 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 50.0 3.12e-01 100.0% 57.2%
4004549 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 47.0 4.03e-01 91.8% 96.0%
3598155 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 50.0 4.05e-01 100.0% 84.2%
3967745 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 48.0 4.59e-01 100.0% 96.0%
3791560 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.56 49.0 3.48e-01 100.0% 49.7%
3846046 221.1.1.195 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › VCIP135_N 0.56 40.0 3.93e-01 75.4% 72.3%
3936885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 43.0 4.26e-01 86.9% 92.3%
3547089 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 46.0 4.19e-01 100.0% 68.9%
3933782 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.56 46.0 4.28e-01 100.0% 97.6%
4980573 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 46.0 3.31e-01 95.1% 80.0%
3572941 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 49.0 4.09e-01 100.0% 93.3%
5049240 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 48.0 4.06e-01 100.0% 96.2%
1217153 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.55 45.0 2.99e-01 100.0% 74.4%
3226827 4.1.1.133 beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.55 47.0 4.04e-01 100.0% 61.0%
160843 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 38.0 3.15e-01 75.4% 76.4%
3493294 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 3.57e-01 96.7% 69.7%
3442209 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.54 46.0 3.84e-01 100.0% 94.8%
3186858 1.1.1.27 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N 0.53 37.0 2.31e-01 77.0% 91.7%
3204035 1.1.17.4 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.53 43.0 2.84e-01 100.0% 28.5%
3283546 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 39.0 3.12e-01 83.6% 42.0%
3236014 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 44.0 2.85e-01 100.0% 43.7%
4125768 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.51 39.0 3.05e-01 85.2% 41.3%
3596917 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.51 42.0 3.24e-01 93.4% 55.9%
4223490 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.50 44.0 3.06e-01 100.0% 94.9%
3172487 220.1.1.57 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.50 41.0 3.19e-01 96.7% 79.4%
3477290 1.1.5.9 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.50 40.0 2.78e-01 90.2% 78.3%