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MN988486.1__QIG68060.1__EVB55_125__00125
Bact-VirMN988486.1__QIG68060.1__EVB55_125__00125
Identity
- Accession:
- MN988486 ↗
- Kingdom:
- phage
Quality
83.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pootjesviridae›
Trinifflemingvirus›
Rhizobium_phage_RHph_Y68
TaxID: 2509787
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-92
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yweA05 | 3.30.70.2570 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation factor 4, C-terminal domain | 0.66 | 41.0 | 4.63e-01 | 96.7% | 83.8% |
| 2gk6A03 | 6.10.140.1240 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 33.0 | 4.26e-01 | 94.4% | 96.0% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.58 | 42.0 | 3.95e-01 | 97.8% | 62.4% |
| 1yqhA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 40.0 | 3.89e-01 | 73.3% | 92.3% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 37.0 | 4.00e-01 | 74.4% | 82.9% |
| 4yzgA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.54 | 41.0 | 2.88e-01 | 86.7% | 24.8% |
| 1lxnA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 39.0 | 3.89e-01 | 80.0% | 96.9% |
| 1vk8A00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 39.0 | 3.95e-01 | 80.0% | 97.8% |
| 2ic2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 3.65e-01 | 97.8% | 65.4% |
| 5irbA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 34.0 | 3.32e-01 | 96.7% | 56.7% |
| 2o3iA01 | 3.40.1610.10 | Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain | 0.52 | 41.0 | 3.11e-01 | 87.8% | 84.3% |
| 3jrqA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.51 | 42.0 | 3.06e-01 | 92.2% | 84.1% |
| 6vydA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.50 | 38.0 | 2.69e-01 | 81.1% | 27.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3603767 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.64 | 44.0 | 4.19e-01 | 84.4% | 60.0% |
| 3699329 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.61 | 39.0 | 2.64e-01 | 80.0% | 16.1% |
| 3208869 | 868.1.1.3 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 | 0.60 | 51.0 | 3.86e-01 | 95.6% | 100.0% |
| 4040528 | 304.24.1.16 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › PrmA | 0.60 | 45.0 | 4.59e-01 | 81.1% | 100.0% |
| 3918163 | 304.20.1.1 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind | 0.57 | 43.0 | 3.78e-01 | 82.2% | 92.1% |
| 5069565 | 304.26.1.0 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like | 0.56 | 42.0 | 4.13e-01 | 78.9% | 97.9% |
| 3210904 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.54 | 48.0 | 4.23e-01 | 98.9% | 88.1% |
| 4997210 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.54 | 41.0 | 4.17e-01 | 88.9% | 82.2% |
| 3385583 | 288.1.1.1 ↗ | a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 | 0.53 | 43.0 | 3.25e-01 | 88.9% | 59.1% |
| 5049019 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.52 | 39.0 | 3.77e-01 | 80.0% | 91.3% |
| 4946800 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 42.0 | 3.59e-01 | 91.1% | 99.4% |