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MN988487.1__QIG68248.1__EVB56_057__00057
Bact-VirMN988487.1__QIG68248.1__EVB56_057__00057
Identity
- Accession:
- MN988487 ↗
- Kingdom:
- phage
Quality
78.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-66
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4qicC01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.65 | 56.0 | 4.40e-01 | 96.7% | 52.0% |
| 1a3qA01 | 2.60.40.340 | Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain | 0.64 | 44.0 | 3.17e-01 | 75.0% | 24.0% |
| 1or7B01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.64 | 55.0 | 4.76e-01 | 96.7% | 93.6% |
| 2yksA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.64 | 36.0 | 2.85e-01 | 70.0% | 27.4% |
| 3rr1A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.64 | 45.0 | 3.42e-01 | 73.3% | 70.1% |
| 3flkA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.64 | 51.0 | 3.20e-01 | 91.7% | 97.5% |
| 5c17A00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.64 | 45.0 | 3.14e-01 | 75.0% | 76.2% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 47.0 | 3.24e-01 | 76.7% | 39.9% |
| 3jteA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 52.0 | 4.18e-01 | 100.0% | 92.9% |
| 2v7fA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 43.0 | 3.31e-01 | 76.7% | 36.0% |
| 1hy0A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.59 | 46.0 | 3.52e-01 | 85.0% | 47.4% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.58 | 47.0 | 4.22e-01 | 91.7% | 75.6% |
| 3h87B00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.58 | 41.0 | 3.24e-01 | 76.7% | 52.9% |
| 2w4sA00 | 1.10.10.1440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain | 0.58 | 47.0 | 4.24e-01 | 93.3% | 75.6% |
| 2uuiA00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.57 | 50.0 | 3.77e-01 | 100.0% | 63.2% |
| 5zzjA02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.57 | 41.0 | 2.67e-01 | 78.3% | 17.1% |
| 2erbA01 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.56 | 41.0 | 3.42e-01 | 78.3% | 65.4% |
| 2qddA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 39.0 | 3.10e-01 | 75.0% | 86.9% |
| 4rw0A00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.55 | 43.0 | 3.16e-01 | 88.3% | 94.6% |
| 2dk4A00 | 4.10.280.110 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Pre-mRNA processing factor 4 domain | 0.55 | 39.0 | 3.65e-01 | 85.0% | 60.5% |
| 2ds2D01 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.54 | 35.0 | 3.63e-01 | 73.3% | 66.7% |
| 2k3nA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.54 | 46.0 | 3.50e-01 | 100.0% | 75.6% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.54 | 38.0 | 3.70e-01 | 75.0% | 89.6% |
| 3gzfD00 | 1.10.150.420 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus | 0.54 | 36.0 | 3.21e-01 | 70.0% | 73.6% |
| 3dkaB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.53 | 46.0 | 3.62e-01 | 100.0% | 49.6% |
| 4q20A02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 41.0 | 3.14e-01 | 88.3% | 61.7% |
| 2jnsA01 | 1.20.1270.220 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 39.0 | 3.58e-01 | 83.3% | 79.0% |
| 2qffA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 45.0 | 4.27e-01 | 100.0% | 100.0% |
| 5dicA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.52 | 41.0 | 3.35e-01 | 88.3% | 49.6% |
| 6n36A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.50 | 44.0 | 2.90e-01 | 100.0% | 89.8% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5031367 | 7510.1.1.1 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh | 0.64 | 53.0 | 3.81e-01 | 98.3% | 92.5% |
| 4003837 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.63 | 43.0 | 3.63e-01 | 71.7% | 45.0% |
| 4111395 | 3960.1.1.1 ↗ | alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › AadA_C | 0.63 | 45.0 | 3.76e-01 | 76.7% | 83.8% |
| 3742018 | 7094.1.1.2 ↗ | alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › LIS_MGM1 | 0.62 | 42.0 | 3.62e-01 | 70.0% | 55.8% |
| 5074223 | 622.5.1.0 ↗ | alpha bundles › YvfG-like › Probable 26S proteasome regulatory subunit p27 › Probable 26S proteasome regulatory subunit p27 | 0.62 | 44.0 | 3.87e-01 | 75.0% | 55.6% |
| 3477053 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 40.0 | 3.64e-01 | 71.7% | 50.0% |
| 4992444 | 2484.1.1.330 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 | 0.60 | 45.0 | 3.34e-01 | 81.7% | 42.4% |
| 3860334 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.60 | 42.0 | 3.48e-01 | 73.3% | 94.0% |
| 3936678 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.60 | 41.0 | 3.74e-01 | 71.7% | 55.0% |
| 3786380 | 2484.1.1.45 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › CAF1 | 0.60 | 52.0 | 3.37e-01 | 100.0% | 82.1% |
| 4951651 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.59 | 41.0 | 3.94e-01 | 75.0% | 63.2% |
| 3798489 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.59 | 41.0 | 3.35e-01 | 71.7% | 40.0% |
| 5029464 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.59 | 52.0 | 4.75e-01 | 100.0% | 82.5% |
| 3499993 | 3722.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 | 0.59 | 50.0 | 3.10e-01 | 91.7% | 17.1% |
| 3990885 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.59 | 40.0 | 3.54e-01 | 71.7% | 48.9% |
| 3789467 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.59 | 42.0 | 3.59e-01 | 75.0% | 48.4% |
| 3540239 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.58 | 43.0 | 3.61e-01 | 80.0% | 49.5% |
| 4485926 | 601.7.1.58 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › PF27235 | 0.58 | 44.0 | 3.49e-01 | 88.3% | 98.6% |
| 3802707 | 601.1.1.39 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › GCIP_N | 0.58 | 49.0 | 3.73e-01 | 100.0% | 57.4% |
| 3448189 | 3755.4.1.17 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Rx_N | 0.58 | 49.0 | 3.58e-01 | 95.0% | 70.3% |
| 3284163 | 3960.1.1.1 ↗ | alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › AadA_C | 0.57 | 48.0 | 3.75e-01 | 93.3% | 71.3% |
| 3258488 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.57 | 41.0 | 3.38e-01 | 75.0% | 63.0% |
| 3569684 | 108.1.1.95 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › CCD48 | 0.57 | 43.0 | 3.75e-01 | 83.3% | 64.2% |
| 3680573 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.56 | 45.0 | 3.74e-01 | 95.0% | 78.3% |
| 3272274 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.56 | 42.0 | 2.99e-01 | 81.7% | 27.4% |
| 3453441 | 141.1.1.4 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C | 0.55 | 42.0 | 2.71e-01 | 86.7% | 46.9% |
| 3246087 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 43.0 | 3.04e-01 | 93.3% | 27.4% |
| 4386562 | 110.1.1.28 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Dredd_2nd | 0.53 | 41.0 | 3.62e-01 | 86.7% | 86.3% |
| 3785168 | 7094.1.1.2 ↗ | alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › LIS_MGM1 | 0.53 | 41.0 | 3.51e-01 | 85.0% | 55.0% |
| 4311410 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.52 | 39.0 | 3.93e-01 | 91.7% | 95.4% |
| 3363051 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.51 | 44.0 | 3.85e-01 | 96.7% | 98.9% |
| 3471901 | 3640.1.1.0 ↗ | alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain | 0.51 | 35.0 | 3.04e-01 | 75.0% | 70.5% |
| 4054978 | 7579.1.1.89 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE | 0.50 | 40.0 | 2.36e-01 | 90.0% | 11.4% |
D2
medium
residues 79-122
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xmjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 43.0 | 3.91e-01 | 72.7% | 65.1% |
| 7xoiD01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 42.0 | 3.20e-01 | 77.3% | 91.6% |
| 2ystA01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.56 | 39.0 | 3.05e-01 | 75.0% | 43.8% |
| 1bihA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 2.96e-01 | 75.0% | 45.4% |
| 8agcA01 | 3.40.50.12610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 40.0 | 2.80e-01 | 100.0% | 90.8% |
| 5yk4A04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.52 | 36.0 | 2.71e-01 | 79.5% | 25.0% |
| 3p3yA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 2.82e-01 | 75.0% | 44.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4127813 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.62 | 43.0 | 3.28e-01 | 75.0% | 68.2% |
| 3789210 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.58 | 42.0 | 2.61e-01 | 86.4% | 11.9% |
| 3744768 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.56 | 43.0 | 3.19e-01 | 86.4% | 55.0% |
| 4991793 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 41.0 | 2.77e-01 | 95.5% | 35.1% |
| 4102373 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.54 | 37.0 | 3.02e-01 | 72.7% | 48.9% |
| 3717247 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.50 | 43.0 | 2.77e-01 | 100.0% | 39.1% |