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MN988487.1__QIG68256.1__EVB56_065__00065
Bact-VirMN988487.1__QIG68256.1__EVB56_065__00065
Identity
- Accession:
- MN988487 ↗
- Kingdom:
- phage
Quality
74.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-91
Domain cluster:
rep: SR-VP_4-6_scaffold_141_4176636_prodigal-single.1__X__X__00125__D2-85
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22945.3 best | LEM-3_GIY-YIG | 44.5 | 2.30e-11 | 95.5% | 55.0% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.84 | 78.0 | 7.77e-01 | 100.0% | 98.9% |
| 3klqA01 | 2.60.40.3050 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.69 | 39.0 | 3.57e-01 | 70.8% | 42.0% |
| 4dipH00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 40.0 | 3.61e-01 | 71.9% | 72.3% |
| 2iboA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 40.0 | 4.06e-01 | 83.1% | 97.8% |
| 5uh0A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 37.0 | 3.27e-01 | 92.1% | 49.3% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.51 | 36.0 | 3.76e-01 | 74.2% | 97.6% |
| 3zx7A02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.50 | 38.0 | 3.28e-01 | 79.8% | 98.5% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3622050 | 821.1.1.7 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG | 0.94 | 91.0 | 6.72e-01 | 100.0% | 57.4% |
| 3404363 | 821.1.1.7 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG | 0.94 | 90.0 | 6.85e-01 | 100.0% | 66.5% |
| 3226334 | 821.1.1.7 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG | 0.93 | 89.0 | 6.70e-01 | 100.0% | 58.4% |
| 3212287 | 821.1.1.7 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG | 0.93 | 89.0 | 7.22e-01 | 100.0% | 70.0% |
| 3963488 | 821.1.1.7 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG | 0.90 | 86.0 | 7.75e-01 | 100.0% | 83.5% |
| 77927 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.85 | 79.0 | 7.76e-01 | 100.0% | 96.8% |
| 4111785 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.83 | 68.0 | 6.68e-01 | 97.8% | 81.1% |
| 3505268 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.81 | 76.0 | 6.48e-01 | 100.0% | 85.9% |
| 4981567 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.75 | 67.0 | 5.93e-01 | 96.6% | 77.6% |
| 4033923 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.68 | 58.0 | 5.38e-01 | 94.4% | 75.2% |
| 3601005 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.66 | 35.0 | 3.51e-01 | 70.8% | 48.4% |
| 3601329 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.63 | 35.0 | 3.50e-01 | 70.8% | 51.6% |
| 3622513 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 37.0 | 4.28e-01 | 77.5% | 98.3% |
| 4012606 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.56 | 35.0 | 3.26e-01 | 84.3% | 48.7% |
| 3548981 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.55 | 36.0 | 3.40e-01 | 70.8% | 54.5% |
| 3733539 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.54 | 37.0 | 3.07e-01 | 73.0% | 78.8% |
| 5000700 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.53 | 47.0 | 4.32e-01 | 94.4% | 96.4% |
| 3788787 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.50 | 36.0 | 3.08e-01 | 75.3% | 85.3% |
D2
high
residues 123-186