←Back to structures

MN988487.1__QIG68258.1__EVB56_067__00067

Bact-Vir

MN988487.1__QIG68258.1__EVB56_067__00067

Identity

Accession:
MN988487 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_Y1_10

TaxID: 2509570

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 155-200
PDB
Domain cluster: rep: ON526839.1__URG17631.1__GRN51_150__00015__D54-100
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 78.0 6.85e-01 100.0% 69.1%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 4.27e-01 73.9% 57.5%
2ppxA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 52.0 4.85e-01 95.7% 72.1%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 53.0 4.91e-01 100.0% 90.0%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.59 40.0 3.12e-01 73.9% 60.2%
4f92B10 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.58 52.0 3.60e-01 100.0% 82.5%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.54 41.0 3.58e-01 91.3% 72.3%
5vmzA03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 39.0 4.06e-01 97.8% 97.5%
1ihnA00 3.40.1230.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like 0.51 41.0 3.28e-01 100.0% 78.8%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.88 78.0 6.81e-01 100.0% 68.1%
3335756 4156.1.1.1 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 0.76 52.0 3.54e-01 71.7% 76.8%
3171408 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.68 55.0 5.42e-01 95.7% 92.0%
3587703 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.67 55.0 5.43e-01 97.8% 90.0%
3587398 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.62 49.0 4.64e-01 93.5% 85.0%
3978768 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.60 49.0 4.54e-01 100.0% 90.8%
4968600 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.59 49.0 3.92e-01 97.8% 51.0%
3791537 108.1.1.101 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_7, EF-hand_8 0.57 41.0 3.04e-01 84.8% 74.5%
3624135 108.1.1.27 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.57 41.0 3.45e-01 78.3% 78.8%
3414098 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 3.35e-01 80.4% 89.4%
4785539 101.1.1.33 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 38.0 2.86e-01 89.1% 81.8%
D2 medium residues 1-98
PDB
Domain cluster: rep: qs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00175__D11-114