←Back to structures

MN988488.1__QIG68292.1__EVB57_015__00015

Bact-Vir

MN988488.1__QIG68292.1__EVB57_015__00015

Identity

Accession:
MN988488 ↗
Kingdom:
phage

Quality

70.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Tepoztlanvirus› Rhizobium_phage_RHph_Y1_20

TaxID: 2509571

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-102
PDB
Domain cluster: rep: JX100814.1__AFU86770.1__CcrRogue_gp288__00288__D6-83
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.69 62.0 4.82e-01 100.0% 54.5%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 4.13e-01 100.0% 52.6%
3akhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 53.0 3.31e-01 93.0% 15.8%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.63 47.0 2.83e-01 93.0% 11.1%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 47.0 3.87e-01 84.2% 54.1%
6klsA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.62 48.0 4.21e-01 89.5% 79.8%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.61 52.0 4.01e-01 98.2% 89.3%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 3.61e-01 80.7% 46.7%
4iykA02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 49.0 3.97e-01 98.2% 94.1%
3b70A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.58 45.0 3.42e-01 93.0% 46.7%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.58 45.0 4.29e-01 100.0% 72.5%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 48.0 4.12e-01 98.2% 87.8%
6nobA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 47.0 2.91e-01 93.0% 15.4%
1x6cA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 49.0 3.89e-01 96.5% 67.8%
7szeB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.57 46.0 3.76e-01 89.5% 76.6%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.57 37.0 4.16e-01 70.2% 86.4%
4dkaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 48.0 4.31e-01 100.0% 95.3%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 3.87e-01 91.2% 63.4%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 44.0 3.44e-01 98.2% 38.3%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 43.0 3.65e-01 86.0% 63.7%
1f2uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 39.0 2.94e-01 86.0% 28.2%
5vqjA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.56 41.0 2.76e-01 89.5% 20.8%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 46.0 3.66e-01 100.0% 56.7%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.56 38.0 3.43e-01 89.5% 50.0%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 46.0 3.17e-01 93.0% 45.3%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.55 38.0 3.42e-01 91.2% 50.0%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 49.0 3.07e-01 100.0% 84.5%
1cukA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 3.89e-01 78.9% 95.5%
7k98B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 46.0 3.78e-01 98.2% 79.8%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.55 36.0 3.24e-01 93.0% 46.4%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 38.0 3.71e-01 82.5% 63.6%
2ljwA00 3.30.428.40 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 0.54 42.0 3.51e-01 86.0% 84.6%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.54 36.0 2.71e-01 84.2% 27.4%
2k8qA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.03e-01 78.9% 72.4%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.55e-01 91.2% 56.8%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 40.0 3.42e-01 91.2% 49.5%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.53 44.0 3.46e-01 94.7% 44.8%
4cckA03 3.90.930.40 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.53 47.0 3.47e-01 100.0% 74.7%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.53 35.0 3.49e-01 70.2% 65.0%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.53 45.0 3.03e-01 100.0% 53.4%
4g41A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.52 47.0 3.03e-01 96.5% 86.4%
1k4nA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 42.0 2.95e-01 91.2% 27.9%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.11e-01 86.0% 62.2%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.52 38.0 3.04e-01 93.0% 35.9%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 43.0 3.72e-01 98.2% 87.6%
2f8xC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.80e-01 100.0% 91.5%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.42e-01 86.0% 67.7%
5jipA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.80e-01 100.0% 92.2%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 42.0 3.46e-01 98.2% 84.3%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 43.0 3.44e-01 98.2% 73.2%
1nf7A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 38.0 2.28e-01 82.5% 11.9%
1fyhB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.65e-01 98.2% 87.6%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.64e-01 98.2% 88.8%
3besR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.43e-01 96.5% 90.1%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969410 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.72 64.0 5.02e-01 100.0% 62.2%
4656484 1.1.1.5 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Zn_protease 0.71 64.0 4.67e-01 100.0% 50.0%
4882945 1.1.1.5 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Zn_protease 0.69 61.0 4.64e-01 100.0% 48.1%
4536848 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.67 54.0 4.18e-01 100.0% 39.2%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.63 47.0 4.47e-01 100.0% 67.1%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 46.0 4.29e-01 98.2% 64.3%
5012485 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.62 47.0 4.36e-01 84.2% 77.3%
4002771 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 40.0 3.10e-01 91.2% 30.4%
3707549 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.59 51.0 3.08e-01 100.0% 90.6%
3163745 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 48.0 3.22e-01 93.0% 55.7%
3803056 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.58 42.0 2.74e-01 91.2% 16.7%
3775836 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.57 48.0 3.99e-01 98.2% 65.5%
2559738 79.1.1.9 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp34_trimer 0.57 38.0 2.37e-01 89.5% 11.2%
4203354 252.2.1.9 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › PF27551 0.57 48.0 4.08e-01 94.7% 61.1%
1170462 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.57 41.0 4.07e-01 91.2% 73.8%
3607981 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 3.82e-01 98.2% 60.8%
3275715 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 44.0 3.70e-01 86.0% 66.0%
3450529 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.56 44.0 4.20e-01 96.5% 72.9%
3680932 220.1.1.180 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7642 0.56 46.0 3.72e-01 94.7% 77.4%
3386801 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 46.0 3.98e-01 98.2% 65.0%
None — 0.56 41.0 2.43e-01 80.7% 10.4%
4523548 4.8.1.35 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.55 45.0 3.98e-01 91.2% 62.4%
3620703 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 42.0 3.46e-01 86.0% 77.3%
3450757 1.1.1.20 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N 0.54 46.0 2.81e-01 100.0% 48.7%
3513530 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 42.0 3.27e-01 86.0% 50.8%
3290541 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.54 40.0 3.91e-01 93.0% 72.3%
3401476 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 38.0 3.87e-01 77.2% 81.8%
4020624 705.1.1.1 ↗ beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH 0.54 44.0 3.69e-01 91.2% 68.7%
3509197 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 42.0 3.77e-01 87.7% 76.5%
4443445 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 43.0 2.55e-01 87.7% 28.1%
3239567 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 41.0 3.43e-01 86.0% 61.9%
None — 0.53 41.0 3.34e-01 86.0% 57.4%
3297966 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.53 42.0 3.49e-01 98.2% 45.0%
3625905 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 42.0 3.13e-01 87.7% 45.3%
3621125 3209.1.1.1 ↗ a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e 0.53 44.0 3.41e-01 94.7% 42.2%
4259726 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.53 44.0 2.69e-01 93.0% 26.6%
4018215 2003.1.3.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Lys_Orn_oxgnase 0.53 43.0 2.57e-01 94.7% 31.0%
5082912 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.53 44.0 3.39e-01 93.0% 70.0%
1291229 101.1.2.194 ↗ alpha arrays › HTH › HTH › winged helix domain › RIOX1_C_WH 0.53 46.0 3.51e-01 100.0% 79.1%
3578264 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 40.0 3.36e-01 87.7% 58.2%
3574615 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 41.0 3.14e-01 87.7% 47.1%
3698801 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.52 40.0 2.50e-01 87.7% 82.0%
3232476 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 40.0 3.43e-01 87.7% 82.0%
3248639 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.52 44.0 3.76e-01 100.0% 89.0%
3791256 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 39.0 3.26e-01 86.0% 79.1%
3983642 220.1.1.73 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF3461 0.51 45.0 3.88e-01 100.0% 86.7%
5055108 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 42.0 2.72e-01 96.5% 30.2%
3998298 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 39.0 2.67e-01 82.5% 34.8%
3959772 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 34.0 2.52e-01 70.2% 29.1%
4948163 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.50 42.0 2.89e-01 96.5% 30.9%
3190430 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 42.0 3.05e-01 100.0% 38.9%