←Back to structures
MN988490.1__QIG68342.1__EVB59_008__00008
Bact-VirMN988490.1__QIG68342.1__EVB59_008__00008
Identity
- Accession:
- MN988490 ↗
- Kingdom:
- phage
Quality
78.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 44-123
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 52.0 | 5.16e-01 | 81.2% | 68.7% |
| 2xseA00 | 1.20.120.1440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain | 0.69 | 49.0 | 3.93e-01 | 75.0% | 42.8% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 42.0 | 3.81e-01 | 82.5% | 49.1% |
| 1a7eA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.61 | 43.0 | 3.84e-01 | 75.0% | 62.7% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.61 | 38.0 | 3.84e-01 | 87.5% | 61.7% |
| 3hi0A03 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.60 | 49.0 | 3.68e-01 | 96.2% | 35.8% |
| 4dmbB00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.60 | 46.0 | 3.50e-01 | 86.3% | 34.7% |
| 4yosA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 43.0 | 3.46e-01 | 85.0% | 38.7% |
| 3vkgA09 | 1.20.920.30 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.59 | 43.0 | 3.53e-01 | 76.2% | 83.3% |
| 2k19A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.59 | 41.0 | 3.87e-01 | 80.0% | 59.2% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.56 | 42.0 | 4.12e-01 | 81.2% | 73.3% |
| 2etdA00 | 1.20.1440.20 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain | 0.56 | 40.0 | 3.41e-01 | 76.2% | 56.7% |
| 2yksA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.55 | 47.0 | 4.21e-01 | 98.8% | 97.4% |
| 2hr2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 45.0 | 3.70e-01 | 93.8% | 74.4% |
| 4a4kA01 | 1.20.1500.20 | Mainly Alpha › Up-down Bundle › YheA-like fold › | 0.54 | 35.0 | 3.10e-01 | 96.2% | 46.0% |
| 3k17A01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 46.0 | 3.42e-01 | 97.5% | 42.3% |
| 3cskA02 | 3.30.540.30 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › | 0.53 | 46.0 | 3.71e-01 | 100.0% | 93.2% |
| 2xq9A02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.53 | 45.0 | 4.02e-01 | 98.8% | 99.2% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 37.0 | 3.75e-01 | 96.2% | 74.7% |
| 3v53E00 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.53 | 36.0 | 3.41e-01 | 72.5% | 57.8% |
| 3vkgA15 | 1.10.8.1220 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 39.0 | 3.73e-01 | 78.8% | 88.3% |
| 1z1nX04 | 3.90.10.10 | Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 | 0.52 | 39.0 | 3.21e-01 | 82.5% | 94.5% |
| 3tahA02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 42.0 | 4.13e-01 | 88.7% | 84.1% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.51 | 37.0 | 3.68e-01 | 78.8% | 79.3% |
| 1gnlA01 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 40.0 | 3.40e-01 | 85.0% | 66.9% |
| 2ijqA00 | 1.10.3450.10 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like | 0.51 | 40.0 | 3.42e-01 | 88.7% | 77.2% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 39.0 | 3.82e-01 | 81.2% | 76.1% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.51 | 38.0 | 3.73e-01 | 78.8% | 75.3% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.50 | 43.0 | 4.21e-01 | 97.5% | 100.0% |
| 3umcD02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.50 | 35.0 | 3.59e-01 | 83.7% | 78.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5000181 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.62 | 38.0 | 3.47e-01 | 80.0% | 44.5% |
| 3998777 | 101.1.10.4 ↗ | alpha arrays › HTH › HTH › Cyclin-like › RB_B | 0.62 | 43.0 | 3.48e-01 | 72.5% | 83.9% |
| 4848262 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.58 | 44.0 | 4.03e-01 | 81.2% | 94.4% |
| 3226186 | 101.1.10.4 ↗ | alpha arrays › HTH › HTH › Cyclin-like › RB_B | 0.58 | 43.0 | 3.39e-01 | 80.0% | 53.5% |
| 3389963 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.58 | 42.0 | 4.45e-01 | 80.0% | 91.4% |
| 3843153 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.57 | 43.0 | 3.68e-01 | 81.2% | 82.2% |
| 4999090 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.57 | 41.0 | 3.53e-01 | 76.2% | 64.6% |
| 5021813 | 5058.1.1.101 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › DUF1622 | 0.56 | 38.0 | 3.52e-01 | 70.0% | 79.0% |
| 5051294 | 601.41.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › C-terminal domain in uncharacterized DUF3829-like protein › C-terminal domain in uncharacterized DUF3829-like protein | 0.55 | 46.0 | 4.04e-01 | 95.0% | 94.4% |
| 3898611 | 611.12.1.1 ↗ | alpha bundles › N-cbl like › Izumo sperm-egg fusion protein 1 N-terminal domain › Izumo sperm-egg fusion protein 1 N-terminal domain › IZUMO | 0.53 | 45.0 | 3.79e-01 | 91.3% | 57.7% |
| 3207847 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.53 | 41.0 | 4.01e-01 | 81.2% | 77.6% |
| 3603512 | 633.5.1.1 ↗ | alpha bundles › Bromodomain-like › LemA-like › LemA-like › LemA | 0.53 | 37.0 | 3.15e-01 | 75.0% | 62.8% |
| 3727022 | 101.1.10.32 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_N | 0.53 | 40.0 | 3.32e-01 | 82.5% | 57.9% |
| 3621072 | 109.4.1.443 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MOR2-PAG1_C | 0.51 | 43.0 | 3.44e-01 | 100.0% | 74.6% |