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MN988490.1__QIG68355.1__EVB59_021__00021

Bact-Vir

MN988490.1__QIG68355.1__EVB59_021__00021

Identity

Accession:
MN988490 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_Y3_1

TaxID: 2509775

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 40-128
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 39.0 3.57e-01 94.4% 53.4%
5aj3P00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.52 41.0 3.77e-01 84.3% 91.5%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.50 32.0 3.50e-01 86.5% 80.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3607882 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 4.23e-01 97.8% 66.4%
5027317 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 36.0 2.98e-01 96.6% 37.1%
3271786 193.1.1.0 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like 0.55 40.0 3.17e-01 75.3% 72.9%
3423460 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.53 45.0 2.78e-01 88.8% 59.6%
1421013 4.1.1.22 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L27e 0.51 36.0 3.08e-01 70.8% 88.6%
3519838 4096.1.1.1 ↗ a+b two layers › NAP-like › NAP-like › NAP-like › NAP 0.51 37.0 2.61e-01 76.4% 85.5%