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MN988496.1__QIG68672.1__EVB67_022__00022

Bact-Vir

MN988496.1__QIG68672.1__EVB67_022__00022

Identity

Accession:
MN988496 ↗
Kingdom:
phage

Quality

73.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_TM3_3_14B

TaxID: 2509575

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-82
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00284__D7-61
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 51.0 5.82e-01 100.0% 98.2%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 51.0 5.01e-01 100.0% 67.5%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 51.0 5.33e-01 100.0% 79.4%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 50.0 5.65e-01 100.0% 93.0%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 51.0 5.55e-01 100.0% 90.3%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 49.0 5.25e-01 100.0% 83.1%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 51.0 4.29e-01 100.0% 47.1%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 51.0 5.51e-01 100.0% 89.1%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.70 45.0 5.04e-01 100.0% 84.5%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 50.0 5.52e-01 100.0% 94.9%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 48.0 5.40e-01 100.0% 96.5%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 49.0 5.18e-01 100.0% 93.8%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.69e-01 100.0% 83.3%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.60 50.0 4.90e-01 100.0% 84.8%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 4.31e-01 100.0% 82.5%
1v29B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.59 52.0 4.80e-01 100.0% 83.5%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 4.58e-01 97.3% 100.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 4.08e-01 100.0% 82.5%
2wbfX00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 49.0 3.40e-01 100.0% 32.5%
6p3qA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 49.0 3.88e-01 100.0% 69.6%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.56 38.0 4.27e-01 98.6% 96.4%
7uvpA03 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.55 39.0 3.21e-01 75.7% 85.5%
3r74B02 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.53 43.0 3.32e-01 94.6% 84.4%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 34.0 3.85e-01 97.3% 94.2%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.51 35.0 3.83e-01 97.3% 91.5%
5f67B00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 41.0 3.79e-01 93.2% 85.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3550699 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.64 48.0 4.47e-01 100.0% 63.2%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.62e-01 100.0% 82.9%
3866907 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 47.0 4.59e-01 100.0% 76.5%
3059317 4.1.1.116 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_14 0.60 53.0 4.66e-01 100.0% 93.8%
3675120 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 48.0 4.61e-01 100.0% 75.3%
4618633 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.59 39.0 4.31e-01 94.6% 88.1%
3770804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 46.0 4.49e-01 100.0% 78.8%
3213653 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 53.0 5.21e-01 100.0% 92.5%
3798523 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 53.0 5.19e-01 100.0% 92.5%
3842362 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.58 49.0 4.53e-01 100.0% 74.7%
3520654 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.58 37.0 3.06e-01 100.0% 32.7%
3999482 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.57 50.0 4.43e-01 100.0% 78.2%
4929725 375.1.1.289 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.56 34.0 3.87e-01 94.6% 97.8%
3724767 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.56 49.0 3.17e-01 100.0% 26.5%
4643742 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 44.0 4.25e-01 100.0% 77.6%
2987714 212.1.1.17 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFG_IV 0.56 39.0 3.22e-01 75.7% 84.9%
4027502 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 36.0 3.79e-01 100.0% 76.9%
3931053 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.55 47.0 4.35e-01 100.0% 90.0%
3770801 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.53 46.0 4.27e-01 100.0% 80.0%
3423907 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.52 46.0 3.57e-01 100.0% 78.8%
3599176 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 45.0 3.04e-01 100.0% 29.8%
5061113 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.52 33.0 3.67e-01 98.6% 87.3%
3422852 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.51 46.0 3.87e-01 100.0% 72.0%
3287111 2003.1.1.39 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_NADP 0.50 39.0 2.57e-01 90.5% 29.9%