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MN988496.1__QIG68693.1__EVB67_043__00043
Bact-VirMN988496.1__QIG68693.1__EVB67_043__00043
Identity
- Accession:
- MN988496 ↗
- Kingdom:
- phage
Quality
89.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-48
Domain cluster:
rep: JN175269.1__AEO14571.1__MT_57025__00024__D14-55
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5xbfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.66 | 48.0 | 3.99e-01 | 80.9% | 97.7% |
| 1uw0A01 | 3.30.1740.10 | Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type | 0.66 | 54.0 | 4.46e-01 | 100.0% | 51.0% |
| 2l31A00 | 3.30.1740.10 | Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type | 0.65 | 54.0 | 4.22e-01 | 100.0% | 43.8% |
| 3tcaA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.63 | 48.0 | 3.90e-01 | 83.0% | 90.0% |
| 5oomJ01 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.63 | 53.0 | 4.79e-01 | 97.9% | 98.5% |
| 5yzzC00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.59 | 50.0 | 3.90e-01 | 100.0% | 91.0% |
| 1wgrA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 44.0 | 3.78e-01 | 83.0% | 98.8% |
| 4fe9A03 | 2.60.40.3620 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 50.0 | 3.89e-01 | 100.0% | 67.3% |
| 3bnwB00 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.59 | 48.0 | 3.33e-01 | 100.0% | 27.4% |
| 2k5nA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 49.0 | 4.29e-01 | 97.9% | 86.5% |
| 1cukA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 47.0 | 4.34e-01 | 97.9% | 97.0% |
| 5os9A00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.58 | 47.0 | 3.70e-01 | 100.0% | 91.3% |
| 4dloB01 | 4.10.1240.10 | Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain | 0.57 | 40.0 | 3.70e-01 | 100.0% | 54.5% |
| 2y3aA01 | 3.10.20.770 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.57 | 41.0 | 2.64e-01 | 83.0% | 29.6% |
| 2id0A04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 47.0 | 3.94e-01 | 100.0% | 97.7% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.55 | 40.0 | 3.35e-01 | 100.0% | 42.7% |
| 4pkcC00 | 6.20.90.20 | Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit | 0.55 | 39.0 | 4.07e-01 | 100.0% | 95.1% |
| 7ct1A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 40.0 | 3.40e-01 | 80.9% | 97.6% |
| 2lkoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 37.0 | 2.72e-01 | 100.0% | 23.9% |
| 8aasC01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 45.0 | 3.65e-01 | 100.0% | 61.8% |
| 3nkgA00 | 2.60.120.790 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 42.0 | 3.02e-01 | 93.6% | 87.6% |
| 2rfrA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 43.0 | 3.07e-01 | 100.0% | 28.6% |
| 3ebyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 43.0 | 3.13e-01 | 100.0% | 30.1% |
| 1gg3A02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 39.0 | 3.41e-01 | 80.9% | 96.2% |
| 3eo5A01 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.53 | 44.0 | 3.70e-01 | 100.0% | 65.9% |
| 2wyqA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 39.0 | 3.40e-01 | 83.0% | 94.8% |
| 3s6pA03 | 2.60.270.70 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › | 0.53 | 45.0 | 3.26e-01 | 100.0% | 33.8% |
| 2mlbA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 38.0 | 3.27e-01 | 80.9% | 87.3% |
| 1fjrA02 | 2.170.180.11 | Mainly Beta › Beta Complex › Methuselah ectodomain, domain 2 › Methuselah ectodomain, domain 2 | 0.52 | 43.0 | 3.20e-01 | 93.6% | 63.2% |
| 3fjyA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.52 | 41.0 | 2.92e-01 | 97.9% | 97.7% |
| 2n1kA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 46.0 | 3.55e-01 | 100.0% | 51.9% |
| 4usoA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 38.0 | 3.03e-01 | 97.9% | 44.9% |
| 2k4nA00 | 3.30.720.70 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.51 | 43.0 | 3.34e-01 | 100.0% | 44.1% |
| 3og4B01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 45.0 | 3.47e-01 | 100.0% | 59.2% |
| 5nfiB02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 41.0 | 3.12e-01 | 100.0% | 91.7% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3662203 | 377.1.2.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP | 0.72 | 59.0 | 5.02e-01 | 100.0% | 54.1% |
| 4432988 | 865.1.1.1 ↗ | beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 | 0.72 | 55.0 | 3.61e-01 | 100.0% | 19.5% |
| 4028826 | 377.1.2.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger | 0.64 | 53.0 | 4.03e-01 | 97.9% | 39.2% |
| 3699520 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.63 | 47.0 | 4.71e-01 | 97.9% | 82.0% |
| 3927708 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 49.0 | 4.14e-01 | 93.6% | 76.7% |
| 3357649 | 213.1.1.5 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › MOZ_SAS | 0.62 | 51.0 | 3.63e-01 | 100.0% | 40.0% |
| 3916007 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 50.0 | 4.60e-01 | 100.0% | 100.0% |
| 3335487 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.58 | 47.0 | 3.39e-01 | 100.0% | 41.2% |
| 3785193 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.58 | 39.0 | 3.12e-01 | 100.0% | 32.4% |
| 4994359 | 3124.1.1.1 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC | 0.57 | 44.0 | 4.39e-01 | 100.0% | 84.0% |
| 3286818 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.56 | 46.0 | 3.39e-01 | 97.9% | 34.1% |
| 3236774 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 43.0 | 2.64e-01 | 100.0% | 12.6% |
| 3230635 | 2484.1.1.190 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 | 0.55 | 35.0 | 2.25e-01 | 100.0% | 11.2% |
| 4022137 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 46.0 | 3.04e-01 | 100.0% | 22.3% |
| 2632043 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.55 | 45.0 | 3.26e-01 | 100.0% | 32.1% |
| 3586413 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.55 | 40.0 | 3.06e-01 | 85.1% | 41.5% |
| 3655399 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 45.0 | 3.41e-01 | 100.0% | 65.6% |
| 3713172 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.54 | 38.0 | 2.59e-01 | 78.7% | 23.6% |
| 4944002 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 44.0 | 2.79e-01 | 100.0% | 16.8% |
| 5023638 | 821.1.1.4 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 | 0.53 | 43.0 | 3.18e-01 | 100.0% | 78.0% |
| 4954309 | 2.1.1.375 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MJ0548_C | 0.53 | 44.0 | 3.66e-01 | 100.0% | 71.1% |
| 4979124 | 821.1.1.4 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 | 0.52 | 43.0 | 3.10e-01 | 100.0% | 76.8% |
| 4411074 | 3124.1.1.1 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC | 0.51 | 40.0 | 4.02e-01 | 100.0% | 86.0% |
| 5001137 | 821.1.1.4 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 | 0.51 | 42.0 | 3.15e-01 | 100.0% | 80.0% |
| 5002369 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 42.0 | 3.24e-01 | 100.0% | 39.1% |
| 3526382 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 42.0 | 3.33e-01 | 97.9% | 83.6% |
| 3726658 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.51 | 39.0 | 2.72e-01 | 95.7% | 22.8% |
| 5037411 | 304.22.1.0 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain | 0.51 | 40.0 | 3.27e-01 | 93.6% | 90.0% |
| 4334767 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.51 | 44.0 | 3.52e-01 | 100.0% | 49.5% |
| 3370809 | 2.1.1.179 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REV3_N | 0.51 | 39.0 | 3.38e-01 | 97.9% | 54.4% |
| 2337294 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.51 | 30.0 | 2.13e-01 | 78.7% | 14.2% |
| 4025113 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 43.0 | 3.21e-01 | 100.0% | 39.2% |
| 4984762 | 1.1.1.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2 | 0.50 | 41.0 | 3.22e-01 | 100.0% | 61.7% |
| 215919 | 2484.1.1.19 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1,Tnp_DNA_bind | 0.50 | 42.0 | 2.46e-01 | 100.0% | 11.7% |
| 4979631 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.50 | 41.0 | 2.98e-01 | 100.0% | 67.3% |