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MN988516.1__QIG70394.1__EVB88_010__00010

Bact-Vir

MN988516.1__QIG70394.1__EVB88_010__00010

Identity

Accession:
MN988516 ↗
Kingdom:
phage

Quality

96.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_N28_2

TaxID: 2509584

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-116
PDB
Domain cluster: rep: MH809533.1__AYJ74340.1__phiE058_004__00004__D579-730
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18812.7 best PBECR3 31.8 1.60e-07 100.0% 49.6%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.74 29.0 3.96e-01 95.7% 68.9%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.71 27.0 4.19e-01 86.1% 88.6%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 39.0 4.81e-01 87.8% 93.0%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.65 49.0 5.32e-01 87.0% 94.8%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 41.0 4.88e-01 90.4% 97.4%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.59 45.0 4.34e-01 80.0% 71.1%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.58 34.0 3.11e-01 89.6% 44.7%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 48.0 3.43e-01 95.7% 31.3%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.57 29.0 3.35e-01 93.0% 66.3%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 4.46e-01 90.4% 97.5%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.54 31.0 3.90e-01 96.5% 93.0%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 41.0 2.90e-01 95.7% 26.8%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.53 31.0 2.90e-01 88.7% 47.5%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.98e-01 95.7% 28.6%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.53 33.0 2.85e-01 96.5% 40.7%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 4.48e-01 90.4% 99.1%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 40.0 3.80e-01 82.6% 90.4%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 45.0 3.26e-01 96.5% 35.2%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.51 45.0 2.94e-01 95.7% 32.6%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.51 32.0 2.95e-01 100.0% 47.7%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4966488 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.82 52.0 6.33e-01 80.9% 98.7%
3839094 234.3.1.6 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain › DUF3519, PBECR3 0.81 76.0 6.40e-01 100.0% 64.4%
4942674 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.79 47.0 5.96e-01 78.3% 100.0%
4993827 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.75 51.0 6.01e-01 89.6% 100.0%
4968653 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.73 54.0 5.87e-01 96.5% 91.6%
3174935 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 46.0 3.12e-01 100.0% 19.5%
5061264 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.69 47.0 5.44e-01 94.8% 100.0%
4972327 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.64 50.0 5.47e-01 94.8% 100.0%
3803056 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.64 43.0 3.21e-01 96.5% 28.9%
3382673 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.63 41.0 3.00e-01 94.8% 25.2%
4662378 1032.1.1.0 ↗ alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain 0.62 39.0 2.28e-01 94.8% 8.1%
3459798 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 42.0 2.91e-01 93.9% 22.5%
3941306 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.59 49.0 3.41e-01 95.7% 28.6%
4969372 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 43.0 2.69e-01 97.4% 15.9%
148788 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.57 48.0 3.43e-01 95.7% 31.3%
5048444 5.1.4.143 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF6454 0.57 42.0 3.24e-01 95.7% 35.9%
3511087 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.56 44.0 3.04e-01 93.0% 26.4%
3714612 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 42.0 3.71e-01 78.3% 68.5%
3222814 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 37.0 4.32e-01 93.0% 100.0%
3185089 9.1.1.37 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF6314 0.55 45.0 3.89e-01 90.4% 90.8%
3511321 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.54 43.0 2.71e-01 96.5% 15.8%
358014 243.1.1.22 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Lumazine_bd_2 0.54 45.0 4.46e-01 90.4% 97.5%
3218497 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.54 43.0 3.04e-01 95.7% 28.0%
3214201 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.54 42.0 3.16e-01 82.6% 82.8%
3941131 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.54 45.0 3.19e-01 97.4% 29.7%
185414 3347.1.1.1 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 0.54 31.0 2.91e-01 89.6% 47.8%
3934016 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 41.0 2.82e-01 97.4% 24.2%
3928311 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 44.0 3.15e-01 95.7% 30.4%
3740897 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.53 43.0 3.07e-01 93.0% 29.9%
3408795 12.1.1.60 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Chitin_bind_4 0.53 28.0 3.80e-01 90.4% 98.4%
3393661 243.19.1.2 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains › Chitin_bind_4 0.53 28.0 3.76e-01 88.7% 98.3%
2605238 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.53 45.0 4.69e-01 93.0% 100.0%
3536856 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.53 47.0 4.31e-01 99.1% 90.3%
3593405 897.1.1.0 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.53 35.0 3.04e-01 95.7% 45.3%
4862662 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.53 42.0 2.93e-01 97.4% 27.2%
4027123 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 39.0 2.69e-01 97.4% 23.7%
3725091 5.1.5.93 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.52 45.0 2.97e-01 97.4% 23.0%
3198523 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.52 46.0 3.15e-01 97.4% 29.3%
3939750 5.1.4.55 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ELYS-bb 0.52 48.0 3.13e-01 100.0% 24.8%
3392825 59.1.3.0 ↗ beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains 0.52 36.0 3.84e-01 86.1% 83.0%
3479716 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.51 34.0 3.88e-01 99.1% 92.9%
5043802 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 28.0 2.81e-01 72.2% 48.7%
6395 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.50 43.0 4.19e-01 93.0% 87.4%