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MN988516.1__QIG70459.1__EVB88_075__00075

Bact-Vir

MN988516.1__QIG70459.1__EVB88_075__00075

Identity

Accession:
MN988516 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-49
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 65.0 5.57e-01 80.9% 59.7%
3i71B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 59.0 5.47e-01 72.3% 58.6%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 69.0 5.52e-01 87.2% 49.4%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 73.0 6.56e-01 93.6% 74.6%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 63.0 5.69e-01 80.9% 61.9%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 62.0 5.60e-01 80.9% 60.3%
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 61.0 5.32e-01 80.9% 60.6%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 62.0 5.28e-01 80.9% 58.9%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 61.0 5.40e-01 80.9% 57.6%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 60.0 4.85e-01 80.9% 48.3%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 60.0 4.84e-01 83.0% 42.7%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 60.0 5.34e-01 80.9% 58.2%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 59.0 5.61e-01 83.0% 67.9%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.79 60.0 4.33e-01 83.0% 29.8%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 68.0 5.18e-01 95.7% 46.7%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 61.0 5.65e-01 83.0% 70.7%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 58.0 4.78e-01 83.0% 44.7%
5y9sC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 59.0 4.93e-01 83.0% 51.2%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 61.0 5.81e-01 85.1% 74.5%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 61.0 5.98e-01 85.1% 82.0%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 56.0 5.16e-01 83.0% 60.3%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.77 60.0 4.85e-01 87.2% 53.3%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.77 61.0 4.31e-01 87.2% 31.9%
2y1hB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.75 60.0 3.64e-01 85.1% 33.2%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 53.0 5.34e-01 76.6% 85.1%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 57.0 4.59e-01 83.0% 47.7%
3hdtA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 60.0 4.06e-01 89.4% 72.0%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 64.0 5.97e-01 100.0% 93.3%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 52.0 4.62e-01 78.7% 51.4%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 61.0 5.23e-01 97.9% 63.7%
7y9hB01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.73 59.0 3.64e-01 95.7% 33.0%
1o4xA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 59.0 5.68e-01 91.5% 81.5%
6l25A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.72 58.0 3.56e-01 87.2% 32.5%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 51.0 5.13e-01 76.6% 93.6%
2bpoA04 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.72 54.0 3.68e-01 80.9% 33.3%
1lfuP00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 56.0 4.75e-01 89.4% 63.4%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 54.0 5.25e-01 85.1% 81.5%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.71 55.0 4.38e-01 85.1% 47.9%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 49.0 4.57e-01 74.5% 65.6%
2gloA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 48.0 4.49e-01 76.6% 62.7%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.67 54.0 3.71e-01 97.9% 38.3%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.65 54.0 3.38e-01 95.7% 82.3%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 50.0 3.94e-01 87.2% 43.7%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.65 45.0 4.60e-01 72.3% 75.6%
2de2A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 52.0 3.40e-01 93.6% 34.0%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 53.0 4.34e-01 100.0% 89.8%
5d0yA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.59 46.0 3.33e-01 93.6% 78.1%
1cxsA02 3.40.228.10 Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 0.58 48.0 3.16e-01 100.0% 54.5%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.51 44.0 3.62e-01 100.0% 65.5%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5047083 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.91 69.0 5.79e-01 80.9% 52.0%
4955139 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.88 67.0 5.94e-01 80.9% 58.5%
4933929 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.86 65.0 5.50e-01 80.9% 50.7%
4947507 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.86 65.0 4.01e-01 80.9% 15.8%
4928175 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.85 61.0 6.45e-01 76.6% 85.7%
4971366 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.85 64.0 5.40e-01 80.9% 52.0%
3778380 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 66.0 5.75e-01 85.1% 68.6%
5059633 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.84 64.0 6.05e-01 80.9% 69.1%
5062037 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.84 64.0 6.31e-01 80.9% 76.0%
3785702 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.84 62.0 5.39e-01 78.7% 55.7%
5021422 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.83 63.0 5.59e-01 80.9% 58.5%
3243507 101.1.1.289 alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.83 71.0 6.28e-01 93.6% 80.0%
4968864 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 58.0 5.96e-01 74.5% 77.8%
5018201 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.82 61.0 5.66e-01 80.9% 63.3%
3967748 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 67.0 5.42e-01 89.4% 50.6%
4244028 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.80 68.0 6.27e-01 93.6% 80.0%
3510638 101.1.1.67 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.80 56.0 5.56e-01 76.6% 70.0%
3279743 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.80 65.0 5.66e-01 89.4% 64.3%
5064701 101.1.2.879 alpha arrays › HTH › HTH › winged helix domain › DUF134 0.79 67.0 5.57e-01 93.6% 60.0%
4342758 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.79 54.0 5.17e-01 72.3% 65.5%
3998880 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 67.0 5.31e-01 95.7% 47.4%
4032183 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.78 58.0 4.90e-01 83.0% 47.5%
4148347 101.1.1.26 alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.78 66.0 5.13e-01 95.7% 47.1%
4088912 2004.1.1.188 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin2 0.78 64.0 4.13e-01 87.2% 69.8%
4002499 101.1.1.19 alpha arrays › HTH › HTH › Three-helical HTH › SRP_SPB 0.78 67.0 4.44e-01 100.0% 31.3%
4955603 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.78 68.0 6.15e-01 100.0% 83.1%
5073990 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.77 66.0 5.68e-01 97.9% 72.0%
3452698 101.1.10.37 alpha arrays › HTH › HTH › Cyclin-like › PF26138 0.77 65.0 5.13e-01 93.6% 49.5%
4997129 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.77 64.0 6.35e-01 93.6% 94.0%
3959252 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 66.0 6.07e-01 95.7% 80.0%
5009653 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 60.0 5.43e-01 87.2% 70.8%
3432588 101.1.3.12 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › PF26138 0.77 60.0 4.74e-01 85.1% 47.3%
4090141 101.1.1.494 alpha arrays › HTH › HTH › Three-helical HTH › HTH_29 0.76 55.0 5.13e-01 78.7% 66.7%
3452676 101.1.1.267 alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.76 66.0 5.24e-01 97.9% 52.6%
4964212 102.1.1.27 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.75 65.0 5.76e-01 100.0% 77.1%
3404418 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.75 57.0 4.92e-01 85.1% 54.3%
1674868 101.1.1.19 alpha arrays › HTH › HTH › Three-helical HTH › SRP_SPB 0.75 61.0 4.70e-01 93.6% 51.8%
3987666 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.75 56.0 4.65e-01 83.0% 45.9%
3943462 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 60.0 5.71e-01 89.4% 81.8%
4885816 375.1.1.10 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1e 0.73 57.0 3.54e-01 85.1% 28.6%
3460321 101.1.1.267 alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.73 63.0 4.36e-01 97.9% 31.2%
3640485 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.73 52.0 3.54e-01 76.6% 33.3%
4560931 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 60.0 5.16e-01 93.6% 61.3%
3645591 101.1.1.362 alpha arrays › HTH › HTH › Three-helical HTH › RF-1 0.72 52.0 4.25e-01 78.7% 43.3%
4642847 375.1.1.46 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1g 0.72 55.0 3.33e-01 85.1% 23.9%
4946097 2005.1.1.29 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g 0.71 58.0 3.59e-01 89.4% 27.9%
3424045 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.71 51.0 4.91e-01 78.7% 70.9%
4080915 2005.1.1.29 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g 0.70 56.0 3.44e-01 89.4% 27.3%
None 0.70 56.0 3.36e-01 89.4% 23.1%
3468522 101.1.1.67 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.69 50.0 4.89e-01 91.5% 70.9%
3509240 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.67 51.0 4.63e-01 85.1% 60.0%
4002185 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.67 48.0 4.22e-01 78.7% 50.7%
3890040 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.66 50.0 3.66e-01 87.2% 33.6%
3753093 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.65 49.0 4.50e-01 85.1% 61.5%
4809777 6004.1.1.2 extended segments › FATC domain › FATC domain › FATC domain › ETC_C1_NDUFA5 0.65 47.0 3.61e-01 100.0% 33.9%
4929108 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.64 55.0 4.62e-01 100.0% 95.3%