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MN988519.1__QIG70576.1__EVB91_005__00005

Bact-Vir

MN988519.1__QIG70576.1__EVB91_005__00005

Identity

Accession:
MN988519 ↗
Kingdom:
phage

Quality

94.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-85
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ng6A01 1.10.1510.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain 0.84 78.0 7.61e-01 100.0% 96.7%
1kt1A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.75 47.0 3.73e-01 72.9% 34.2%
2w0gA00 1.20.58.610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain 0.73 46.0 3.97e-01 80.0% 41.9%
1wjzA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.72 48.0 4.66e-01 94.1% 61.7%
3kr9A02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 47.0 5.54e-01 89.4% 96.7%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 47.0 3.61e-01 75.3% 31.2%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 53.0 5.13e-01 80.0% 84.4%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.68 50.0 4.55e-01 76.5% 77.3%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 48.0 4.23e-01 74.1% 68.9%
3a98A02 1.20.1270.350 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain 0.67 52.0 5.16e-01 100.0% 78.2%
2qwoB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.66 50.0 4.94e-01 81.2% 84.8%
2o8pA00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.65 46.0 3.38e-01 74.1% 37.0%
1xg2B00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.64 56.0 4.69e-01 98.8% 94.0%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 41.0 3.18e-01 74.1% 30.6%
3gnlB02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 43.0 4.70e-01 95.3% 88.2%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 45.0 4.59e-01 75.3% 77.6%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.63 40.0 4.24e-01 71.8% 72.7%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.62 56.0 4.63e-01 98.8% 74.8%
2px0A01 1.20.120.1380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain 0.61 47.0 4.98e-01 100.0% 95.9%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.60 43.0 3.97e-01 75.3% 80.2%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.60 54.0 5.49e-01 98.8% 98.8%
4ehsA00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.59 41.0 3.67e-01 71.8% 71.8%
3rc3A05 1.20.58.1080 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 40.0 3.76e-01 92.9% 54.0%
4hfvA01 1.20.1440.330 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.59 52.0 4.71e-01 100.0% 83.8%
1foeA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.59 53.0 4.02e-01 100.0% 74.0%
2xseA00 1.20.120.1440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain 0.59 44.0 3.67e-01 83.5% 44.0%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.58 51.0 4.70e-01 96.5% 88.0%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 52.0 4.86e-01 97.6% 99.0%
1s7bA00 1.10.3730.20 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.56 39.0 3.64e-01 75.3% 57.5%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.56 49.0 4.57e-01 98.8% 91.8%
1wp9B03 1.20.1320.20 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › hef helicase domain 0.56 49.0 4.31e-01 100.0% 78.5%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.56 51.0 4.53e-01 100.0% 69.7%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 51.0 4.56e-01 100.0% 74.2%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 47.0 3.98e-01 100.0% 68.0%
2z1qB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 49.0 4.18e-01 100.0% 74.3%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.53 48.0 4.25e-01 97.6% 70.7%
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.53 41.0 4.18e-01 100.0% 86.0%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 38.0 3.61e-01 78.8% 75.5%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.51 46.0 3.49e-01 98.8% 68.5%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.51 45.0 4.09e-01 100.0% 77.6%
3d0cB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 42.0 2.91e-01 92.9% 30.0%
4ezbA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.50 42.0 3.79e-01 92.9% 66.7%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973839 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.89 82.0 6.71e-01 97.6% 59.0%
3386043 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.88 82.0 6.69e-01 100.0% 60.0%
3742733 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.87 81.0 7.68e-01 100.0% 88.8%
3732769 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.86 80.0 6.44e-01 100.0% 56.1%
4579852 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.86 79.0 6.51e-01 100.0% 60.0%
4262515 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.84 77.0 7.27e-01 100.0% 88.0%
4015513 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.83 76.0 6.26e-01 100.0% 58.0%
3690273 109.4.1.271 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAN1_TPR 0.80 58.0 4.20e-01 75.3% 29.3%
3243299 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.79 52.0 5.67e-01 75.3% 81.4%
3168021 604.12.1.2 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.74 44.0 4.58e-01 74.1% 63.7%
5056432 607.1.1.0 alpha arrays › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 0.74 63.0 5.48e-01 91.8% 75.2%
3407072 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.73 49.0 5.06e-01 74.1% 72.5%
3260973 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.73 52.0 4.73e-01 74.1% 69.1%
3183105 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.72 52.0 3.70e-01 75.3% 30.2%
3291034 3271.1.1.1 alpha arrays › CdiA C-terminal nuclease domain › CdiA C-terminal nuclease domain › CdiA C-terminal nuclease domain › Ntox28 0.71 54.0 5.19e-01 78.8% 89.5%
3272287 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.71 49.0 4.64e-01 71.8% 74.0%
3236284 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.70 48.0 4.96e-01 70.6% 78.8%
3592177 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.70 46.0 5.00e-01 75.3% 81.4%
3458224 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 51.0 4.58e-01 75.3% 60.0%
3824114 604.6.1.24 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › DUF6857 0.69 50.0 4.28e-01 80.0% 48.5%
4459896 622.4.1.1 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › Blo-t-5 0.69 53.0 4.69e-01 78.8% 71.9%
4669161 3812.1.1.16 alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › Med12 0.69 59.0 4.94e-01 92.9% 96.4%
3743879 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.69 50.0 4.85e-01 76.5% 70.5%
3718561 3843.1.1.11 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DGF-1_C 0.66 54.0 3.69e-01 89.4% 82.3%
3174086 109.4.1.1782 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RasGEF_N_2, RICTOR_N, RICTOR_M 0.66 46.0 2.77e-01 71.8% 22.1%
4839189 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.65 45.0 3.99e-01 81.2% 50.0%
3448959 109.4.1.1171 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm_PDR 0.64 47.0 3.87e-01 76.5% 56.7%
3585393 633.7.1.11 alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like › XK-related 0.64 54.0 4.04e-01 100.0% 36.7%
3245731 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.64 44.0 4.50e-01 75.3% 75.0%
3375600 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.64 38.0 3.78e-01 100.0% 55.6%
3198246 109.4.1.1553 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28151 0.64 46.0 2.71e-01 75.3% 26.7%
5078878 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.64 57.0 4.51e-01 96.5% 78.8%
3597397 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.63 53.0 3.90e-01 89.4% 90.0%
3813368 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 48.0 3.07e-01 83.5% 25.1%
3822258 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.60 54.0 4.58e-01 100.0% 95.7%
3902140 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 45.0 4.36e-01 78.8% 71.6%
3731435 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.60 50.0 3.09e-01 90.6% 97.5%
4452814 140.1.1.7 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.59 39.0 3.38e-01 78.8% 43.0%
5005597 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.59 45.0 3.89e-01 81.2% 81.5%
3981475 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.59 50.0 4.22e-01 92.9% 76.4%
3302941 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.59 48.0 3.71e-01 91.8% 51.2%
3925416 109.4.1.1361 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_CAND1 0.59 47.0 3.45e-01 85.9% 61.8%
5065130 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.58 53.0 5.34e-01 98.8% 100.0%
3340833 5086.1.1.109 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Chloroplast_duf 0.57 44.0 4.36e-01 81.2% 85.6%
3264196 5067.1.1.13 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ALMT 0.57 48.0 4.01e-01 98.8% 83.0%
5004498 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.57 50.0 4.72e-01 100.0% 81.0%
3714117 3562.1.1.31 alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › DGF-1_C 0.55 43.0 3.07e-01 89.4% 62.3%
3491651 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.54 47.0 3.74e-01 98.8% 57.3%
3696969 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.54 46.0 4.18e-01 96.5% 76.7%
3364607 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.54 49.0 5.00e-01 97.6% 97.6%
5062170 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 46.0 4.12e-01 97.6% 72.5%
3606297 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.52 43.0 3.23e-01 92.9% 83.3%
3172240 601.2.1.5 alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr 0.51 44.0 3.45e-01 100.0% 84.6%
D2 high residues 92-148
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02637.24 best GatB_Yqey 33.5 5.20e-08 100.0% 36.5%