←Back to structures

MN988519.1__QIG70743.1__EVB91_192__00172

Bact-Vir

MN988519.1__QIG70743.1__EVB91_192__00172

Identity

Accession:
MN988519 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_I1_18

TaxID: 2509726

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-81
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3spdA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.67 40.0 2.68e-01 89.8% 14.5%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 3.40e-01 79.6% 38.0%
3p5jB01 2.20.25.530 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 38.0 3.44e-01 81.6% 44.6%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.57 48.0 4.03e-01 100.0% 95.6%
1rjtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 38.0 3.47e-01 83.7% 47.9%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 39.0 3.03e-01 71.4% 81.7%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.56 45.0 2.98e-01 95.9% 47.5%
3clqA02 3.90.1710.10 Alpha Beta › Alpha-Beta Complex › Enterococcus faecalis V583 fold › Enterococcus faecalis V583 domain 0.55 48.0 3.37e-01 100.0% 34.2%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 36.0 3.47e-01 89.8% 57.9%
4nnaA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 46.0 2.81e-01 98.0% 29.2%
3nqpA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 44.0 2.56e-01 93.9% 70.2%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.54 33.0 3.58e-01 71.4% 67.6%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 35.0 2.73e-01 77.6% 29.1%
2incA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.51 42.0 2.47e-01 100.0% 19.1%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 34.0 3.16e-01 81.6% 48.5%
2l6oA01 2.40.10.320 Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain 0.51 31.0 2.80e-01 89.8% 37.5%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017692 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 53.0 4.35e-01 93.9% 44.4%
3849004 101.1.1.273 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26094 0.61 42.0 3.18e-01 75.5% 89.2%
3606500 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.60 42.0 3.98e-01 89.8% 61.7%
5031247 3755.3.1.127 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N 0.59 40.0 2.77e-01 71.4% 74.1%
3519579 295.1.1.20 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Intu_longin_3 0.58 40.0 3.41e-01 81.6% 42.5%
3338669 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.58 41.0 3.98e-01 75.5% 94.5%
4117020 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 37.0 3.59e-01 95.9% 55.0%
4953241 3755.3.1.127 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N 0.57 38.0 2.73e-01 71.4% 86.9%
3315597 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.57 39.0 3.42e-01 73.5% 48.1%
4929247 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 37.0 4.12e-01 87.8% 94.3%
3418797 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.56 38.0 2.31e-01 71.4% 69.1%
5047912 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.55 42.0 3.80e-01 81.6% 78.5%
4862766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.36e-01 89.8% 46.8%
4017797 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 34.0 3.20e-01 98.0% 49.2%
3801858 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.53 39.0 3.82e-01 91.8% 90.0%
3356481 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.52 38.0 3.33e-01 83.7% 59.0%
5028212 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.51 40.0 2.95e-01 89.8% 74.3%
3474601 3710.1.1.0 ↗ alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain 0.51 41.0 3.06e-01 98.0% 84.8%
3804569 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.51 34.0 3.71e-01 73.5% 87.5%
3717387 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.51 42.0 2.78e-01 98.0% 60.4%
3191646 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 37.0 3.54e-01 81.6% 78.3%