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MN988519.1__QIG70744.1__EVB91_193__00173
Bact-VirMN988519.1__QIG70744.1__EVB91_193__00173
Identity
- Accession:
- MN988519 ↗
- Kingdom:
- phage
Quality
92.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-57
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.92 | 67.0 | 7.27e-01 | 76.4% | 89.4% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 56.0 | 5.03e-01 | 76.4% | 57.9% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.75 | 52.0 | 4.04e-01 | 78.2% | 33.3% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.74 | 54.0 | 4.67e-01 | 78.2% | 54.7% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.72 | 59.0 | 5.19e-01 | 87.3% | 61.5% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.71 | 63.0 | 5.45e-01 | 100.0% | 81.2% |
| 2f2gA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.70 | 60.0 | 4.07e-01 | 100.0% | 38.6% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.70 | 55.0 | 5.47e-01 | 94.5% | 86.0% |
| 1z19A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.69 | 48.0 | 3.98e-01 | 81.8% | 41.0% |
| 1dlcA01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.68 | 57.0 | 3.88e-01 | 100.0% | 94.8% |
| 3w5mA05 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.67 | 56.0 | 3.52e-01 | 100.0% | 50.1% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.66 | 56.0 | 4.56e-01 | 100.0% | 64.6% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 52.0 | 5.05e-01 | 92.7% | 81.0% |
| 2xppA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.65 | 55.0 | 4.22e-01 | 100.0% | 70.1% |
| 2wvxA04 | 1.20.1610.10 | Mainly Alpha › Up-down Bundle › Glycosyl hydrolase family fold › alpha-1,2-mannosidases domains | 0.64 | 55.0 | 3.95e-01 | 100.0% | 82.7% |
| 3ilkA02 | 1.10.8.590 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.64 | 47.0 | 4.38e-01 | 85.5% | 63.2% |
| 3ne5B04 | 6.10.140.730 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 53.0 | 5.47e-01 | 90.9% | 100.0% |
| 1qu3A04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.64 | 53.0 | 4.01e-01 | 100.0% | 69.3% |
| 2dnxA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 52.0 | 4.11e-01 | 100.0% | 68.5% |
| 3w8hB00 | 1.10.12.70 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › | 0.63 | 45.0 | 4.33e-01 | 78.2% | 68.2% |
| 1hp8A00 | 1.10.287.1130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › CytochromE C oxidase copper chaperone | 0.63 | 49.0 | 4.63e-01 | 90.9% | 72.1% |
| 4d3dB02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.62 | 45.0 | 3.52e-01 | 80.0% | 36.4% |
| 2d7lA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.62 | 50.0 | 5.07e-01 | 90.9% | 90.6% |
| 7d1tA01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.60 | 44.0 | 3.20e-01 | 83.6% | 51.6% |
| 2l4bA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.59 | 46.0 | 4.01e-01 | 87.3% | 93.2% |
| 3ulqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 44.0 | 4.37e-01 | 83.6% | 100.0% |
| 3f4sA02 | 1.10.40.80 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › | 0.57 | 39.0 | 3.72e-01 | 83.6% | 60.9% |
| 1vpdA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 48.0 | 3.74e-01 | 100.0% | 84.0% |
| 6jrpA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.56 | 44.0 | 4.33e-01 | 94.5% | 78.7% |
| 2jbrA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.56 | 46.0 | 3.76e-01 | 100.0% | 56.3% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 46.0 | 4.59e-01 | 98.2% | 92.9% |
| 3w6zA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.56 | 48.0 | 3.81e-01 | 100.0% | 86.8% |
| 5je8B02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 47.0 | 3.71e-01 | 100.0% | 85.2% |
| 2cfoA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.54 | 34.0 | 3.48e-01 | 78.2% | 64.8% |
| 1wgfA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.54 | 42.0 | 4.32e-01 | 94.5% | 92.5% |
| 6jqsA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 46.0 | 4.34e-01 | 98.2% | 100.0% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4016216 | 3594.1.1.0 ↗ | alpha bundles › Oncogenic effector CagA domain III › Oncogenic effector CagA domain III › Oncogenic effector CagA domain III | 0.87 | 78.0 | 6.07e-01 | 100.0% | 47.8% |
| 3423402 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.86 | 62.0 | 5.33e-01 | 76.4% | 50.6% |
| 3399433 | 3826.1.1.39 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › WHEP-TRS | 0.83 | 61.0 | 5.64e-01 | 78.2% | 62.9% |
| 3225319 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.83 | 61.0 | 4.74e-01 | 78.2% | 37.4% |
| 4028213 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.83 | 75.0 | 5.53e-01 | 100.0% | 66.7% |
| 3402492 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.82 | 60.0 | 3.96e-01 | 78.2% | 20.5% |
| 2926 | 616.1.1.2 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › WHEP-TRS | 0.82 | 68.0 | 6.86e-01 | 92.7% | 90.7% |
| 3708550 | 1056.1.1.0 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain | 0.81 | 55.0 | 3.49e-01 | 70.9% | 15.6% |
| 4026926 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.80 | 62.0 | 4.59e-01 | 83.6% | 82.2% |
| 3721864 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.80 | 56.0 | 5.34e-01 | 74.5% | 64.6% |
| 3705783 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.79 | 56.0 | 4.78e-01 | 76.4% | 48.9% |
| 4970859 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.78 | 65.0 | 5.34e-01 | 92.7% | 89.0% |
| 3403179 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.77 | 59.0 | 4.74e-01 | 83.6% | 81.0% |
| 3458224 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.76 | 63.0 | 5.04e-01 | 92.7% | 60.0% |
| 3764996 | 11.2.1.77 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › FerA | 0.76 | 63.0 | 4.84e-01 | 90.9% | 81.7% |
| 4184822 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.76 | 66.0 | 3.69e-01 | 98.2% | 14.4% |
| 3697295 | 4336.1.1.5 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › HAM1_N | 0.75 | 60.0 | 5.41e-01 | 89.1% | 64.0% |
| 3528706 | 192.29.1.11 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › FerA | 0.75 | 61.0 | 4.71e-01 | 90.9% | 78.4% |
| 3588719 | 564.1.1.0 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors | 0.75 | 61.0 | 5.86e-01 | 100.0% | 80.0% |
| 3925746 | 3065.1.1.2 ↗ | alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Gp-FAR-1 | 0.74 | 65.0 | 4.87e-01 | 98.2% | 40.7% |
| 3586069 | 109.4.1.1134 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_INTS8_3 | 0.74 | 63.0 | 3.69e-01 | 96.4% | 35.2% |
| 3982352 | 4207.1.2.90 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › FxsA | 0.73 | 49.0 | 3.96e-01 | 70.9% | 45.5% |
| 3309382 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.73 | 53.0 | 3.28e-01 | 78.2% | 13.8% |
| None | — | 0.73 | 64.0 | 3.85e-01 | 98.2% | 71.5% | |
| 3274169 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.70 | 59.0 | 3.50e-01 | 100.0% | 12.4% |
| 5052842 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.70 | 61.0 | 4.21e-01 | 100.0% | 30.5% |
| 3743216 | 2003.1.5.120 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Bmt2 | 0.70 | 61.0 | 3.89e-01 | 100.0% | 53.7% |
| 3923888 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.69 | 49.0 | 3.33e-01 | 78.2% | 24.5% |
| 3753345 | 609.1.1.0 ↗ | alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase | 0.69 | 56.0 | 4.35e-01 | 90.9% | 50.8% |
| 3342220 | 109.4.1.1495 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26522 | 0.68 | 54.0 | 3.43e-01 | 100.0% | 15.7% |
| 5030164 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.68 | 56.0 | 5.29e-01 | 100.0% | 94.3% |
| 4118420 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.66 | 57.0 | 5.46e-01 | 100.0% | 89.2% |
| 3275510 | 109.4.1.271 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAN1_TPR | 0.66 | 54.0 | 3.87e-01 | 92.7% | 35.3% |
| 3492576 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.66 | 47.0 | 3.28e-01 | 78.2% | 31.5% |
| 3784055 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.64 | 47.0 | 3.59e-01 | 78.2% | 40.0% |
| 3174278 | 5048.1.1.1 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP | 0.63 | 55.0 | 3.42e-01 | 100.0% | 29.5% |
| 3957212 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.63 | 53.0 | 5.00e-01 | 98.2% | 97.1% |
| 4319932 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.63 | 54.0 | 4.96e-01 | 100.0% | 86.7% |
| 3352389 | 101.1.10.58 ↗ | alpha arrays › HTH › HTH › Cyclin-like › PF30926 | 0.61 | 47.0 | 4.76e-01 | 100.0% | 92.7% |
| 4974991 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.60 | 48.0 | 3.42e-01 | 100.0% | 26.5% |
| 3183173 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.59 | 38.0 | 3.55e-01 | 78.2% | 51.4% |
| 3980681 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.58 | 49.0 | 4.34e-01 | 94.5% | 85.0% |
| 4369892 | 190.1.1.3 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 | 0.56 | 45.0 | 4.42e-01 | 94.5% | 83.3% |