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MN988519.1__QIG70763.1__EVB91_212__00192

Bact-Vir

MN988519.1__QIG70763.1__EVB91_212__00192

Identity

Accession:
MN988519 ↗
Kingdom:
phage

Quality

73.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_I1_18

TaxID: 2509726

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-51
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o70A02 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.70 59.0 4.22e-01 100.0% 68.6%
1iv8A02 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.62 48.0 3.71e-01 89.4% 72.0%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 43.0 2.62e-01 74.5% 85.0%
3tqfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 50.0 3.59e-01 100.0% 85.5%
2rdgA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 44.0 3.92e-01 83.0% 95.8%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.57 44.0 3.55e-01 100.0% 81.8%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 36.0 3.61e-01 70.2% 58.0%
3frnA03 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 4.08e-01 100.0% 80.4%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.55 43.0 3.84e-01 100.0% 77.1%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.53 42.0 2.89e-01 91.5% 58.0%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 45.0 4.24e-01 97.9% 82.8%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.53 41.0 3.20e-01 100.0% 54.3%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.18e-01 97.9% 44.0%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.52 40.0 3.79e-01 93.6% 84.4%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.65e-01 100.0% 14.9%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 42.0 2.63e-01 97.9% 15.3%
1dq3A02 3.30.160.90 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 42.0 3.63e-01 100.0% 57.9%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.51 37.0 3.26e-01 95.7% 49.3%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 35.0 3.19e-01 100.0% 49.3%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 37.0 2.65e-01 93.6% 67.2%
2wmmA02 3.30.70.3500 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain 0.51 40.0 3.15e-01 93.6% 68.1%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.87e-01 87.2% 87.2%
3oymA01 1.10.340.70 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.50 44.0 3.54e-01 100.0% 64.5%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3930081 386.1.1.251 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7381 0.67 40.0 4.21e-01 70.2% 65.0%
3589933 243.3.1.11 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Staphopain_pro 0.65 43.0 2.97e-01 83.0% 19.0%
4995318 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.65 47.0 3.50e-01 78.7% 98.3%
4837049 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.64 53.0 3.98e-01 100.0% 73.7%
5008200 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 52.0 4.66e-01 93.6% 90.0%
4107230 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.61 43.0 2.61e-01 74.5% 81.5%
3627795 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 45.0 3.83e-01 83.0% 64.7%
3239076 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.60 50.0 4.79e-01 97.9% 87.3%
3994644 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 45.0 2.48e-01 83.0% 7.2%
4031064 4999.1.1.0 ↗ beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like 0.60 41.0 3.93e-01 100.0% 61.8%
4980224 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.59 39.0 2.98e-01 70.2% 31.2%
3927790 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 39.0 3.96e-01 97.9% 66.7%
3989261 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.57 44.0 4.33e-01 93.6% 89.1%
4983636 2011.2.1.6 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › tRNA_deacylase 0.57 41.0 2.83e-01 78.7% 25.0%
3655173 375.13.1.0 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain 0.57 40.0 3.94e-01 72.3% 90.0%
1413813 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.56 43.0 4.20e-01 93.6% 89.1%
3854692 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.54 34.0 2.77e-01 97.9% 30.5%
3509084 5.1.10.10 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › Vps16_N 0.53 36.0 3.32e-01 87.2% 50.0%
3468063 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.53 44.0 2.68e-01 100.0% 15.6%
4126797 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.52 40.0 3.90e-01 95.7% 83.3%
3226910 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.52 40.0 2.68e-01 91.5% 39.1%
4872108 2003.1.5.85 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 40.0 2.74e-01 93.6% 27.0%
5025174 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.51 43.0 3.88e-01 100.0% 67.1%
1171293 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 32.0 3.56e-01 78.7% 93.3%
3785613 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 42.0 2.87e-01 95.7% 97.2%
3972267 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 41.0 2.54e-01 100.0% 13.7%
5005203 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.50 37.0 3.24e-01 85.1% 62.5%