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MN988526.1__QIG72973.1__EVB98_051__00051

Bact-Vir

MN988526.1__QIG72973.1__EVB98_051__00051

Identity

Accession:
MN988526 ↗
Kingdom:
phage

Quality

74.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_N3_2

TaxID: 2509747

Cluster

View cluster (23 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-69
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 48.0 4.04e-01 87.5% 85.7%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 45.0 3.89e-01 78.1% 89.3%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 4.07e-01 81.2% 85.9%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 43.0 4.02e-01 75.0% 72.5%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 3.69e-01 82.8% 77.8%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 42.0 4.18e-01 75.0% 83.8%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.29e-01 100.0% 67.5%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.74e-01 93.8% 93.2%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.52e-01 79.7% 87.5%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.71e-01 87.5% 80.9%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.55e-01 100.0% 79.5%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 4.01e-01 95.3% 77.4%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.75e-01 89.1% 95.2%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.51e-01 93.8% 83.3%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.53e-01 81.2% 71.0%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 3.96e-01 100.0% 56.0%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 42.0 3.65e-01 81.2% 56.5%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 48.0 3.40e-01 93.8% 35.8%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.57 44.0 3.57e-01 89.1% 71.6%
1aw8B00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.57 45.0 4.15e-01 92.2% 64.8%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 41.0 3.48e-01 79.7% 71.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.54e-01 96.9% 100.0%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.65e-01 82.8% 76.6%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.69e-01 95.3% 96.6%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.57e-01 84.4% 77.8%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.57e-01 78.1% 82.0%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.49e-01 82.8% 63.6%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.56 46.0 4.46e-01 96.9% 83.8%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.29e-01 87.5% 82.4%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 36.0 3.96e-01 73.4% 100.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.71e-01 95.3% 98.4%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.55 41.0 3.76e-01 81.2% 97.6%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.53e-01 82.8% 80.0%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.54 44.0 4.52e-01 100.0% 100.0%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 47.0 4.40e-01 100.0% 81.2%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.53 38.0 3.94e-01 78.1% 100.0%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 46.0 3.94e-01 100.0% 63.0%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 44.0 4.40e-01 98.4% 97.1%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.35e-01 81.2% 75.7%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 45.0 2.95e-01 100.0% 26.0%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.52 39.0 3.95e-01 98.4% 86.9%
5lznA00 3.10.20.360 Alpha Beta › Roll › Ubiquitin-like (UB roll) › CKK domain 0.52 42.0 3.55e-01 90.6% 91.0%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 38.0 2.76e-01 82.8% 51.7%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 38.0 2.54e-01 84.4% 79.9%
6a97C01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 35.0 2.87e-01 71.9% 87.8%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 42.0 2.76e-01 100.0% 25.5%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3527472 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.68 54.0 4.26e-01 89.1% 76.3%
3432877 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 4.78e-01 75.0% 95.4%
3325360 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 5.05e-01 84.4% 87.0%
3723092 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.64 49.0 4.07e-01 85.9% 85.8%
3467267 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.64 46.0 4.67e-01 78.1% 84.6%
3634550 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 47.0 3.80e-01 84.4% 77.8%
3202870 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.62 47.0 3.90e-01 84.4% 86.7%
3964422 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 51.0 3.83e-01 100.0% 36.9%
3326132 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 48.0 4.87e-01 98.4% 86.2%
3919968 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 46.0 3.84e-01 85.9% 79.2%
3407821 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 49.0 4.47e-01 100.0% 67.1%
4007999 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.61 48.0 3.90e-01 100.0% 43.7%
3622055 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 46.0 4.25e-01 100.0% 64.7%
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 47.0 4.38e-01 100.0% 68.8%
3463181 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.56e-01 100.0% 81.4%
3883159 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 46.0 4.18e-01 100.0% 61.1%
3810686 4.8.1.7 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SAWADEE 0.59 44.0 4.15e-01 81.2% 78.8%
3173787 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 3.77e-01 85.9% 85.0%
4977860 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.59 42.0 2.62e-01 76.6% 92.4%
3595461 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 44.0 3.77e-01 84.4% 80.9%
3935202 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.59 43.0 3.63e-01 81.2% 73.3%
3504519 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.59 50.0 4.09e-01 100.0% 91.5%
3304602 4.1.1.427 ↗ beta barrels › SH3 › SH3 › SH3 › F-box 0.59 46.0 4.13e-01 98.4% 60.0%
3936442 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 41.0 3.61e-01 76.6% 83.0%
3609866 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.58 44.0 3.31e-01 85.9% 76.6%
3433070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.35e-01 100.0% 82.6%
3913687 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 43.0 3.98e-01 100.0% 61.1%
4646593 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.57 46.0 3.79e-01 100.0% 45.9%
4000403 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.57 41.0 4.43e-01 78.1% 100.0%
3492016 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.57 44.0 4.00e-01 93.8% 61.1%
3503815 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 45.0 4.15e-01 100.0% 68.2%
3712219 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.57 47.0 4.69e-01 93.8% 93.8%
4001937 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.56 38.0 2.63e-01 70.3% 32.5%
4071971 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.56 42.0 3.35e-01 100.0% 37.2%
3870917 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 41.0 3.17e-01 82.8% 47.9%
4927858 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 35.0 3.75e-01 76.6% 74.5%
5030272 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 41.0 3.06e-01 82.8% 43.2%
3499509 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 41.0 3.47e-01 84.4% 71.7%
3595790 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.17e-01 85.9% 74.9%
3640969 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 40.0 2.62e-01 81.2% 91.4%
3547093 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 45.0 4.05e-01 100.0% 66.7%
3266245 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.66e-01 93.8% 85.8%
4572703 101.1.9.6 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N 0.54 39.0 3.14e-01 78.1% 84.4%
4993029 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.54 46.0 3.58e-01 100.0% 92.0%
3797486 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 36.0 3.59e-01 73.4% 67.7%
3532622 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 39.0 3.34e-01 82.8% 69.2%
3393297 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 44.0 4.16e-01 100.0% 78.8%
3804746 1.1.11.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 0.52 43.0 3.64e-01 98.4% 95.0%
3359784 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.52 43.0 4.34e-01 100.0% 100.0%
3741401 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.52 41.0 3.21e-01 90.6% 40.7%
3429682 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 4.03e-01 95.3% 85.3%
3465976 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 4.25e-01 98.4% 100.0%
3923314 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 41.0 2.81e-01 90.6% 44.9%