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MN988526.1__QIG72978.1__EVB98_056__00056

Bact-Vir

MN988526.1__QIG72978.1__EVB98_056__00056

Identity

Accession:
MN988526 ↗
Kingdom:
phage

Quality

94.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_N3_2

TaxID: 2509747

Cluster

View cluster (41 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-109
PDB
Domain cluster: rep: MT889387.1__QOP66146.1__SEA_DANIELLEIGNACE_5__00005__D28-163
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05866.17 best RusA 28.0 3.90e-06 94.4% 82.9%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q8rA00 3.30.1330.70 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Holliday junction resolvase RusA 0.88 84.0 8.13e-01 100.0% 94.9%
3v3tA02 3.30.1330.150 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 0.74 49.0 5.20e-01 100.0% 75.8%
2r75102 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.68 52.0 5.17e-01 100.0% 78.2%
1w5fA02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.66 50.0 4.83e-01 100.0% 71.7%
5hy0A01 3.30.1330.170 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Cyanuric acid hydrolase/Barbiturase, RU A 0.65 51.0 5.17e-01 100.0% 84.3%
3vpaB00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.65 48.0 3.56e-01 100.0% 30.4%
5hweA01 3.30.1330.170 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Cyanuric acid hydrolase/Barbiturase, RU A 0.63 49.0 5.01e-01 100.0% 84.1%
1w5eB02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.63 48.0 4.88e-01 100.0% 82.1%
1ofuA02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.62 47.0 5.01e-01 100.0% 92.5%
2xkbL00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.62 50.0 3.47e-01 100.0% 25.3%
7kgcA01 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.61 49.0 4.73e-01 100.0% 76.0%
5l16A01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.61 48.0 4.61e-01 100.0% 74.0%
1vm6A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 39.0 4.29e-01 70.4% 84.3%
2otmA00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.60 55.0 4.90e-01 100.0% 74.2%
3d01E00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.60 55.0 4.86e-01 100.0% 72.9%
4rhaA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.59 53.0 4.97e-01 100.0% 92.4%
4ei7B01 3.30.1330.190 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 0.57 50.0 4.52e-01 100.0% 72.1%
1nvmB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 41.0 3.71e-01 96.3% 53.9%
1cliB01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.56 45.0 4.09e-01 100.0% 63.3%
2yxzD01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.55 44.0 4.04e-01 100.0% 65.5%
6aeoB01 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.55 48.0 4.51e-01 99.1% 85.2%
3qvsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 40.0 4.17e-01 98.1% 84.2%
4b45A02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.55 43.0 4.27e-01 100.0% 79.7%
1yawB01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.54 42.0 3.99e-01 100.0% 69.4%
3rycB02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.53 47.0 4.62e-01 100.0% 91.2%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.53 48.0 4.63e-01 100.0% 95.0%
1gx1A00 3.30.1330.50 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 0.52 47.0 4.18e-01 100.0% 95.5%
1a8lA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 38.0 3.73e-01 75.9% 98.3%
1dihA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 42.0 4.21e-01 97.2% 88.0%
1tvkA02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.52 47.0 4.62e-01 100.0% 97.4%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3982309 301.4.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.88 83.0 8.01e-01 100.0% 93.3%
318712 301.4.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.85 80.0 7.72e-01 100.0% 93.3%
3963267 301.4.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.83 78.0 7.39e-01 100.0% 94.4%
4156345 301.4.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.81 76.0 7.36e-01 100.0% 95.0%
5083025 301.4.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA 0.78 73.0 6.92e-01 100.0% 96.0%
5032184 301.4.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA 0.72 66.0 6.60e-01 100.0% 96.4%
4537541 301.4.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA 0.71 65.0 6.31e-01 100.0% 96.7%
4955735 301.6.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like 0.68 49.0 4.73e-01 100.0% 67.5%
4948315 301.6.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C 0.67 48.0 5.28e-01 100.0% 94.1%
5050448 301.6.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C 0.66 50.0 4.67e-01 100.0% 63.7%
4639071 301.6.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C 0.66 50.0 4.64e-01 100.0% 63.7%
None — 0.66 49.0 3.46e-01 100.0% 24.9%
4447635 301.6.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C 0.65 49.0 4.72e-01 100.0% 68.8%
3672045 301.6.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C 0.65 49.0 4.36e-01 100.0% 56.7%
4558877 301.6.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like 0.65 50.0 4.73e-01 100.0% 68.5%
4936949 301.6.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C 0.64 48.0 4.51e-01 100.0% 63.7%
4293094 301.7.1.3 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Amido_AtzD_TrzD 0.64 49.0 4.85e-01 100.0% 76.5%
4415704 301.6.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C 0.63 48.0 4.33e-01 100.0% 58.7%
4983100 301.6.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C 0.62 47.0 4.65e-01 100.0% 74.8%
405240 301.6.1.7 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › TubZ-like_C 0.62 50.0 4.46e-01 100.0% 58.9%
4880292 301.7.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Ribonuc_L-PSP 0.60 55.0 4.92e-01 100.0% 74.3%
3713735 301.7.1.4 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › YjgF_endoribonc 0.60 55.0 4.90e-01 100.0% 73.9%
6996 301.7.1.4 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › YjgF_endoribonc 0.60 55.0 4.89e-01 100.0% 73.7%
344504 301.7.1.4 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › YjgF_endoribonc 0.60 55.0 4.91e-01 100.0% 74.8%
4979713 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.59 44.0 4.01e-01 100.0% 58.6%
4210304 298.1.1.9 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C 0.59 42.0 4.22e-01 74.1% 86.4%
4972086 301.2.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like 0.59 46.0 3.62e-01 100.0% 39.1%
4260262 298.1.1.9 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C 0.58 41.0 4.22e-01 74.1% 88.6%
5001175 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.58 43.0 3.98e-01 100.0% 59.3%
4977866 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.58 43.0 3.94e-01 100.0% 57.3%
4172925 298.1.1.9 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C 0.58 40.0 4.33e-01 97.2% 86.7%
3339457 301.13.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 0.58 48.0 4.95e-01 100.0% 98.0%
4982813 4143.1.1.0 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like 0.57 44.0 4.73e-01 99.1% 100.0%
3728115 301.13.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 0.57 52.0 4.38e-01 100.0% 75.6%
None — 0.56 45.0 3.72e-01 100.0% 48.4%
4979374 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.56 44.0 4.07e-01 100.0% 66.4%
5040854 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.55 43.0 3.99e-01 100.0% 64.1%
4948829 304.111.1.4 ↗ a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS 0.55 43.0 3.25e-01 100.0% 32.9%
5044931 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.55 43.0 4.03e-01 100.0% 66.4%
4943452 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.55 43.0 3.92e-01 100.0% 62.8%
3811404 301.13.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 0.55 48.0 4.25e-01 100.0% 79.4%
4983512 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.54 43.0 3.98e-01 100.0% 66.4%
4975667 304.111.1.4 ↗ a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS 0.54 43.0 3.13e-01 100.0% 29.5%
3588161 298.1.1.9 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C 0.54 41.0 4.19e-01 96.3% 84.8%
3516645 301.6.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C 0.53 47.0 3.74e-01 100.0% 48.4%
4944127 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.53 40.0 4.05e-01 98.1% 79.1%
4318787 298.1.1.9 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C 0.53 41.0 4.06e-01 97.2% 79.1%
4080241 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.53 41.0 3.91e-01 100.0% 68.9%
5048033 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.53 44.0 3.80e-01 100.0% 56.1%
2551155 301.6.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C 0.52 46.0 3.78e-01 100.0% 54.2%
6760 298.1.1.9 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C 0.52 42.0 4.19e-01 97.2% 86.4%
5065901 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.51 46.0 4.18e-01 100.0% 75.2%
3339440 3008.1.1.0 ↗ a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.51 41.0 4.15e-01 87.0% 98.1%
4985154 301.2.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like 0.51 44.0 3.75e-01 100.0% 57.2%