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MN988526.1__QIG72981.1__EVB98_059__00059
Bact-VirMN988526.1__QIG72981.1__EVB98_059__00059
Identity
- Accession:
- MN988526 ↗
- Kingdom:
- phage
Quality
85.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-53
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.85 | 50.0 | 4.55e-01 | 91.1% | 46.6% |
| 3tixA02 | 6.10.140.1690 | Special › Helix non-globular › Helix Hairpins › | 0.77 | 60.0 | 4.95e-01 | 100.0% | 48.1% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 50.0 | 3.81e-01 | 80.0% | 30.4% |
| 1hlvA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.74 | 59.0 | 5.39e-01 | 95.6% | 66.7% |
| 7oq4Z01 | 1.20.120.950 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 | 0.67 | 50.0 | 3.83e-01 | 97.8% | 36.7% |
| 6qm7M00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.66 | 58.0 | 3.74e-01 | 100.0% | 82.7% |
| 6j09A04 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.66 | 51.0 | 4.30e-01 | 86.7% | 61.0% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 48.0 | 4.23e-01 | 80.0% | 71.2% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.63 | 48.0 | 4.83e-01 | 80.0% | 80.0% |
| 2r8wA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 48.0 | 2.98e-01 | 88.9% | 28.3% |
| 1nv8B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.62 | 51.0 | 4.39e-01 | 91.1% | 80.3% |
| 2yqzA02 | 1.10.8.900 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.62 | 53.0 | 4.66e-01 | 97.8% | 89.7% |
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.61 | 49.0 | 4.35e-01 | 88.9% | 64.6% |
| 1p49A02 | 1.10.287.550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 49.0 | 4.48e-01 | 88.9% | 69.5% |
| 2j3tD01 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.60 | 50.0 | 3.68e-01 | 97.8% | 99.3% |
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.60 | 48.0 | 4.10e-01 | 100.0% | 100.0% |
| 1uocB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.60 | 53.0 | 3.27e-01 | 100.0% | 17.7% |
| 3iylB02 | 1.10.2050.10 | Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 | 0.60 | 49.0 | 3.63e-01 | 100.0% | 32.8% |
| 3u9rB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.60 | 49.0 | 3.11e-01 | 100.0% | 73.0% |
| 6xasW01 | 3.90.940.10 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega | 0.60 | 42.0 | 4.15e-01 | 91.1% | 69.4% |
| 2fsfB04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.60 | 51.0 | 3.35e-01 | 100.0% | 52.8% |
| 1fs0G02 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.59 | 48.0 | 3.79e-01 | 88.9% | 46.1% |
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.59 | 47.0 | 4.25e-01 | 100.0% | 61.6% |
| 6a95A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.59 | 47.0 | 3.30e-01 | 95.6% | 30.2% |
| 1mdyA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.59 | 43.0 | 3.74e-01 | 84.4% | 51.5% |
| 1p2xA00 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.59 | 45.0 | 3.10e-01 | 84.4% | 25.8% |
| 1mumA00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.58 | 48.0 | 3.01e-01 | 97.8% | 94.5% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.58 | 48.0 | 3.99e-01 | 97.8% | 77.0% |
| 3bbzA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.58 | 46.0 | 4.52e-01 | 86.7% | 89.6% |
| 3c1dA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 4.14e-01 | 91.1% | 78.3% |
| 1e91A00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.56 | 39.0 | 3.25e-01 | 80.0% | 40.0% |
| 3l4gC04 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 43.0 | 2.77e-01 | 97.8% | 99.3% |
| 2w4sA00 | 1.10.10.1440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain | 0.55 | 44.0 | 3.69e-01 | 100.0% | 50.0% |
| 4bzaA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.54 | 46.0 | 4.08e-01 | 100.0% | 66.2% |
| 3e22A03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.51 | 45.0 | 4.25e-01 | 97.8% | 83.3% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 407167 | 3824.1.1.1 ↗ | alpha bundles › HIV Rev › HIV Rev › HIV Rev › REV | 0.87 | 51.0 | 4.47e-01 | 91.1% | 43.5% |
| 3594122 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.75 | 51.0 | 3.34e-01 | 97.8% | 18.8% |
| None | — | 0.72 | 55.0 | 3.41e-01 | 97.8% | 14.6% | |
| 4564044 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.70 | 54.0 | 3.34e-01 | 100.0% | 14.6% |
| 3296105 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.68 | 59.0 | 3.55e-01 | 100.0% | 14.7% |
| 4955523 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.67 | 59.0 | 4.36e-01 | 100.0% | 87.0% |
| 3937640 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.66 | 58.0 | 4.20e-01 | 100.0% | 65.6% |
| 5064398 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.65 | 53.0 | 4.16e-01 | 95.6% | 42.0% |
| 3186336 | 6056.1.1.0 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like | 0.65 | 55.0 | 4.55e-01 | 95.6% | 85.0% |
| 5040283 | 2006.1.1.14 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD | 0.61 | 53.0 | 3.37e-01 | 100.0% | 20.0% |
| 3858699 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.61 | 53.0 | 4.01e-01 | 95.6% | 47.0% |
| 3599587 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 53.0 | 3.48e-01 | 100.0% | 33.5% |
| 4003837 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.60 | 54.0 | 4.12e-01 | 100.0% | 45.0% |
| 3596447 | 102.1.1.32 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_9 | 0.59 | 47.0 | 3.63e-01 | 88.9% | 65.7% |
| 3945002 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.59 | 49.0 | 3.51e-01 | 88.9% | 40.8% |
| 4793214 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.59 | 51.0 | 3.94e-01 | 100.0% | 60.6% |
| 3498247 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 52.0 | 3.23e-01 | 97.8% | 19.1% |
| 4948599 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.58 | 52.0 | 4.11e-01 | 100.0% | 58.9% |
| 3474688 | 3965.1.1.0 ↗ | alpha arrays › Origin recognition complex subunit 3 helical insert domain › Origin recognition complex subunit 3 helical insert domain › Origin recognition complex subunit 3 helical insert domain | 0.58 | 49.0 | 3.26e-01 | 100.0% | 49.5% |
| 3359550 | 7577.1.1.0 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases | 0.57 | 42.0 | 2.47e-01 | 86.7% | 10.3% |
| 3169014 | 4120.1.1.1 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › zf-Tim10_DDP | 0.56 | 47.0 | 3.86e-01 | 100.0% | 51.1% |
| 3258895 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.56 | 47.0 | 4.54e-01 | 100.0% | 84.0% |
| 3450050 | 7581.1.1.25 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › FAE1_CUT1_RppA, ACP_syn_III_C | 0.53 | 44.0 | 2.54e-01 | 97.8% | 17.0% |
| 3593827 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.50 | 39.0 | 3.33e-01 | 97.8% | 65.2% |