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MN988529.1__QIG73166.1__EVC01_002__00002

Bact-Vir

MN988529.1__QIG73166.1__EVC01_002__00002

Identity

Accession:
MN988529 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Cuernavacavirus› Rhizobium_phage_RHph_I38

TaxID: 2509734

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-119
PDB
Domain cluster: rep: NC_049851.1__YP_009904719.1__H1O17_gp341__00341__D231-342
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qwlA02 1.10.8.680 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ypt/Rab-GAP domain of gyp1p, domain 2 0.58 37.0 4.26e-01 98.2% 94.8%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.55 33.0 3.41e-01 90.2% 61.3%
8alzB08 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.53 38.0 3.60e-01 73.2% 88.5%
8sppA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 44.0 3.09e-01 90.2% 74.3%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.53 29.0 3.56e-01 92.0% 84.5%
3gi8C00 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.52 41.0 2.81e-01 84.8% 51.7%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 32.0 3.40e-01 83.0% 71.6%
4r8zA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 38.0 3.18e-01 82.1% 70.2%
1w99A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.50 36.0 3.11e-01 73.2% 86.1%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.50 31.0 3.29e-01 95.5% 68.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3700105 541.1.1.0 ↗ alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit 0.55 38.0 3.83e-01 100.0% 72.7%
3408038 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 40.0 3.16e-01 82.1% 80.8%
3224980 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.51 31.0 3.52e-01 95.5% 80.0%
4021416 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.50 39.0 2.54e-01 81.2% 53.8%
3370585 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.50 39.0 2.62e-01 84.8% 45.6%
D2 high residues 125-218
PDB
Domain cluster: rep: NC_049851.1__YP_009904719.1__H1O17_gp341__00341__D231-342
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nt1A00 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.62 47.0 3.75e-01 83.0% 68.0%
2r0rB00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.61 42.0 4.53e-01 100.0% 87.2%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 52.0 4.91e-01 98.9% 86.0%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.54 42.0 4.13e-01 100.0% 80.0%
1yjgA00 1.20.120.240 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 0.53 46.0 3.97e-01 100.0% 80.3%
3fhnA04 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.52 38.0 3.41e-01 75.5% 77.1%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.51 43.0 3.97e-01 95.7% 96.0%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.50 39.0 3.83e-01 85.1% 86.7%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.50 34.0 3.33e-01 95.7% 63.4%
1k20A01 3.90.1640.10 Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › inorganic pyrophosphatase (n-terminal core) 0.50 36.0 2.97e-01 76.6% 75.8%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3209226 2003.1.2.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase 0.67 52.0 3.50e-01 100.0% 22.3%
4596379 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.61 40.0 4.47e-01 100.0% 90.0%
4567966 109.4.1.2402 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27584, PF27595, PF27648, PF30849 0.60 43.0 2.46e-01 74.5% 28.7%
3385780 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.56 49.0 4.56e-01 100.0% 77.6%
3928912 6126.1.1.0 ↗ alpha bundles › Helical domain in EHD2 › Helical domain in EHD2 › Helical domain in EHD2 0.55 37.0 3.59e-01 100.0% 59.1%
3596205 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 35.0 3.49e-01 77.7% 65.3%
3320579 601.18.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › PsbQ 0.53 46.0 4.03e-01 100.0% 65.5%
3267624 192.29.1.19 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Cornichon 0.52 45.0 4.04e-01 100.0% 91.9%
3927709 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.51 44.0 3.93e-01 100.0% 66.9%