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MN988530.1__QIG73231.1__EVC02_010__00010

Bact-Vir

MN988530.1__QIG73231.1__EVC02_010__00010

Identity

Accession:
MN988530 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kleczkowskavirus› Rhizobium_phage_RHph_N17

TaxID: 2509742

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-86
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bbrA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.75 52.0 4.75e-01 71.4% 74.0%
3fhnA05 1.10.10.2270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Dsl1p vesicle tethering complex, Tip20p subunit, domain E 0.64 30.0 3.18e-01 76.6% 49.3%
3c7jA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.63 49.0 3.93e-01 83.1% 74.7%
2el7B01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 44.0 3.26e-01 84.4% 96.9%
1q90B00 1.20.810.10 Mainly Alpha › Up-down Bundle › Cytochrome Bc1 Complex; Chain C › Cytochrome Bc1 Complex; Chain C 0.56 43.0 3.14e-01 83.1% 59.0%
4b4yA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 40.0 3.26e-01 77.9% 56.4%
5uagE00 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.55 46.0 4.41e-01 96.1% 92.1%
2ppqA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.55 41.0 3.01e-01 81.8% 72.4%
6arhA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 40.0 2.71e-01 80.5% 94.7%
3okgA01 3.90.220.20 Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains 0.54 46.0 3.48e-01 100.0% 90.2%
4bmhA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 42.0 3.12e-01 89.6% 71.3%
3q23A08 1.20.140.110 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.52 45.0 3.56e-01 94.8% 83.8%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.51 37.0 2.98e-01 83.1% 38.7%
2z7bA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.51 39.0 2.85e-01 85.7% 78.1%
3lerA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 36.0 2.54e-01 77.9% 43.8%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.50 35.0 3.47e-01 74.0% 66.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4984959 3758.1.1.113 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Rad50_zn_hook 0.78 35.0 2.24e-01 79.2% 10.3%
4196235 159.1.1.1 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG 0.73 38.0 3.45e-01 76.6% 39.0%
4976513 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 49.0 4.99e-01 71.4% 93.3%
2722040 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.69 47.0 4.47e-01 71.4% 75.8%
3444972 3525.1.1.1 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET 0.66 45.0 4.34e-01 71.4% 72.2%
4045754 110.1.1.18 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death_Lrrd1 0.64 44.0 4.03e-01 71.4% 77.1%
3993129 108.1.1.120 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › PF27858 0.61 42.0 3.81e-01 72.7% 74.5%
4030617 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.60 31.0 3.30e-01 76.6% 54.3%
4247371 2004.1.1.669 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase, AAA_2 0.59 41.0 2.86e-01 72.7% 83.0%
4507144 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 40.0 3.68e-01 71.4% 98.0%
4277306 4974.1.1.0 ↗ alpha bundles › CRISPR-Cas system first helical domain › CRISPR-Cas system first helical domain › CRISPR-Cas system RNase C2c2 first helical domain 0.57 48.0 3.83e-01 90.9% 58.6%
4227027 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 38.0 3.54e-01 70.1% 82.0%
4167099 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.54 46.0 2.84e-01 96.1% 59.0%
5079271 2002.1.1.29 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.54 38.0 2.59e-01 75.3% 84.5%
3919361 193.1.1.1 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH 0.53 35.0 3.54e-01 83.1% 65.0%
3473158 109.62.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › AFF4 C-terminal homology domain › AFF4 C-terminal homology domain 0.53 40.0 2.60e-01 79.2% 36.4%
3739470 192.2.1.31 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 0.50 42.0 3.29e-01 90.9% 46.2%
3978333 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.50 40.0 2.78e-01 88.3% 88.4%
3598120 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.50 34.0 2.87e-01 70.1% 60.8%