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MN988531.1__QIG73369.1__EVC03_061__00060

Bact-Vir

MN988531.1__QIG73369.1__EVC03_061__00060

Identity

Accession:
MN988531 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-58
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.80 61.0 6.08e-01 100.0% 81.5%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 68.0 5.81e-01 100.0% 69.0%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.73 53.0 4.10e-01 84.9% 36.9%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.70 61.0 5.72e-01 100.0% 82.1%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 59.0 5.39e-01 94.3% 80.0%
3njcA00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.68 48.0 3.54e-01 77.4% 52.3%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.68 57.0 4.67e-01 100.0% 95.3%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.68 60.0 3.98e-01 100.0% 34.6%
3rqbA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.67 49.0 3.17e-01 81.1% 37.5%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.67 48.0 3.28e-01 77.4% 21.3%
3k67A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 51.0 3.68e-01 84.9% 77.6%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.66 53.0 4.20e-01 88.7% 76.6%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 56.0 4.46e-01 100.0% 67.3%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 47.0 3.68e-01 83.0% 71.3%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 54.0 3.90e-01 100.0% 67.7%
3hduA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 48.0 3.51e-01 84.9% 77.6%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 46.0 3.90e-01 100.0% 47.8%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 45.0 3.76e-01 83.0% 90.2%
3f1tB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 46.0 3.47e-01 83.0% 77.9%
1x5xA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 45.0 3.67e-01 83.0% 79.8%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 46.0 3.49e-01 84.9% 73.2%
3r8qA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 45.0 3.90e-01 83.0% 94.4%
3s5tA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.60 46.0 3.40e-01 86.8% 93.5%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 45.0 4.45e-01 90.6% 78.7%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 44.0 3.40e-01 83.0% 74.0%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.58 48.0 4.16e-01 98.1% 94.4%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.58 41.0 3.53e-01 77.4% 52.2%
3u0aA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.58 44.0 2.87e-01 84.9% 41.4%
3oguA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 42.0 3.30e-01 81.1% 36.6%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.57 41.0 3.25e-01 79.2% 40.0%
4qfwA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.56 42.0 2.73e-01 83.0% 33.5%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.53e-01 83.0% 87.8%
4p0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.41e-01 90.6% 88.7%
4fxtA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.54 40.0 3.56e-01 86.8% 88.4%
2dleA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.51e-01 83.0% 95.3%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.54 40.0 3.24e-01 84.9% 92.4%
1oh1A00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.54 38.0 3.08e-01 77.4% 36.7%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 46.0 2.86e-01 100.0% 60.3%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.53 46.0 4.02e-01 100.0% 85.4%
5aq1A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 42.0 2.75e-01 94.3% 88.5%
1kvzA00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.52 42.0 3.49e-01 96.2% 87.9%
6r2nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 38.0 3.00e-01 86.8% 93.6%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.56e-01 88.7% 64.2%
2lmeA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.51 36.0 3.08e-01 81.1% 46.7%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 2.88e-01 100.0% 45.9%
6n9aB02 3.30.420.200 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.50 42.0 3.93e-01 98.1% 81.2%
4rs1B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.18e-01 86.8% 81.6%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3342814 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.77 70.0 5.67e-01 100.0% 76.8%
3708283 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 68.0 5.76e-01 100.0% 83.5%
2321269 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.76 68.0 5.81e-01 100.0% 69.0%
3207081 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 65.0 6.07e-01 96.2% 93.8%
4014881 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 65.0 6.27e-01 96.2% 88.3%
3623874 2.1.1.51 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.75 59.0 4.43e-01 88.7% 64.4%
3232865 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 60.0 4.45e-01 88.7% 65.2%
4193599 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 66.0 5.27e-01 100.0% 60.0%
5042801 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 59.0 4.44e-01 88.7% 63.8%
3494172 2.1.1.51 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.74 59.0 4.20e-01 88.7% 58.7%
3473407 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 66.0 5.86e-01 100.0% 82.7%
4028093 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 58.0 4.44e-01 88.7% 68.8%
3948255 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 61.0 4.58e-01 100.0% 38.5%
4466506 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.69e-01 100.0% 80.0%
3592075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.43e-01 100.0% 77.6%
3489469 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.08e-01 100.0% 81.0%
1545879 4.1.1.120 beta barrels › SH3 › SH3 › SH3 › SH3_16 0.71 61.0 4.94e-01 96.2% 100.0%
3890362 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 56.0 5.14e-01 86.8% 85.7%
3231154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 64.0 5.52e-01 100.0% 88.7%
3356605 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 63.0 5.27e-01 100.0% 80.0%
3789647 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 62.0 4.45e-01 100.0% 41.3%
3697524 9.2.1.7 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › PF30970 0.70 52.0 4.38e-01 79.2% 58.9%
3333322 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 62.0 4.58e-01 100.0% 41.5%
160765 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 61.0 5.42e-01 100.0% 84.4%
4398865 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 60.0 4.96e-01 98.1% 84.2%
3485640 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 54.0 4.24e-01 84.9% 68.2%
3782292 4.1.1.170 beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.69 61.0 5.32e-01 100.0% 85.0%
3934655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.17e-01 100.0% 98.8%
5042986 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.83e-01 100.0% 88.3%
1063578 9.2.1.1 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.69 58.0 4.75e-01 100.0% 95.3%
4962256 101.1.2.937 alpha arrays › HTH › HTH › winged helix domain › PF25943 0.69 60.0 4.72e-01 98.1% 65.5%
3288884 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 55.0 4.39e-01 88.7% 48.6%
4655719 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 59.0 4.99e-01 98.1% 70.0%
3261242 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.68 49.0 3.36e-01 77.4% 22.1%
3968432 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 52.0 4.22e-01 86.8% 76.2%
3629316 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 60.0 4.82e-01 100.0% 54.0%
3795384 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 60.0 3.90e-01 100.0% 25.1%
3744510 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.66 52.0 3.57e-01 100.0% 24.1%
3486056 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 50.0 3.70e-01 86.8% 35.1%
3635097 206.1.2.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.64 50.0 3.10e-01 86.8% 29.1%
4944415 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.62 43.0 3.04e-01 73.6% 65.9%
4972821 523.1.1.3 a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 0.62 46.0 3.66e-01 84.9% 50.0%
4048663 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 47.0 5.00e-01 100.0% 97.8%
3409941 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.60 47.0 4.38e-01 90.6% 67.1%
3239417 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.59 47.0 3.58e-01 90.6% 47.4%
3173222 4075.1.1.0 a+b complex topology › RGC domain › RGC domain › RGC domain 0.59 48.0 3.88e-01 98.1% 97.4%
5037370 4200.1.1.0 beta barrels › YmcC-like › YmcC-like › YmcC-like 0.58 50.0 3.74e-01 100.0% 94.4%
3604264 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 47.0 3.90e-01 96.2% 66.0%
4543799 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.57 42.0 3.42e-01 84.9% 78.3%
3510139 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.56 47.0 3.28e-01 98.1% 54.4%
3429037 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 44.0 2.81e-01 92.5% 29.5%
4993641 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.56 42.0 3.86e-01 84.9% 61.3%
4954572 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 41.0 3.27e-01 83.0% 75.0%
4218926 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.55 41.0 3.29e-01 84.9% 82.5%
4382988 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.55 41.0 3.24e-01 83.0% 69.2%
4014324 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 41.0 2.89e-01 83.0% 43.2%
4259228 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.54 40.0 3.28e-01 83.0% 71.8%
4200618 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.54 40.0 3.23e-01 83.0% 77.4%
3177726 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 43.0 3.16e-01 100.0% 49.2%
4397552 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.54 40.0 3.14e-01 83.0% 59.2%
4477076 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 45.0 3.93e-01 94.3% 83.7%
3705072 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.53 42.0 3.35e-01 90.6% 92.2%
3506301 209.1.1.0 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.53 40.0 2.88e-01 86.8% 34.1%
3644755 5084.5.1.23 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › TOC159_MAD 0.52 38.0 2.42e-01 81.1% 17.8%
2125479 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 39.0 2.72e-01 84.9% 44.9%
4438376 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.51 37.0 3.00e-01 83.0% 70.8%
4980082 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.51 38.0 2.48e-01 83.0% 30.0%
4076432 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.51 37.0 2.96e-01 83.0% 74.4%
D2 high residues 63-108
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.82 48.0 3.53e-01 100.0% 24.5%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.77 46.0 2.94e-01 100.0% 13.2%
1yu0A02 2.80.20.10 Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein 0.75 63.0 4.48e-01 97.8% 43.2%
2lojA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.73 43.0 4.57e-01 97.8% 66.7%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.72 58.0 4.07e-01 89.1% 39.6%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 49.0 3.82e-01 100.0% 34.9%
3u1kC01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.67 54.0 3.52e-01 100.0% 19.5%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.67 52.0 4.63e-01 97.8% 60.6%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 56.0 4.39e-01 100.0% 60.6%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 44.0 3.55e-01 100.0% 34.0%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.65 49.0 3.97e-01 95.7% 41.5%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.65 52.0 3.69e-01 93.5% 37.8%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 52.0 3.19e-01 97.8% 28.8%
2vdrB02 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.64 38.0 2.66e-01 84.8% 17.0%
1uyvA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.63 54.0 3.40e-01 100.0% 19.8%
2nn6C00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.63 53.0 3.30e-01 100.0% 16.7%
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.63 52.0 3.54e-01 100.0% 41.9%
2v1yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 49.0 3.95e-01 87.0% 44.9%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 37.0 3.05e-01 89.1% 28.9%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 54.0 4.18e-01 100.0% 57.8%
3c12A02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 51.0 4.27e-01 100.0% 73.6%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.61 51.0 3.63e-01 100.0% 60.8%
2nn6D00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.61 51.0 3.39e-01 100.0% 22.4%
4jonC00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.61 48.0 3.54e-01 100.0% 33.9%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 44.0 3.29e-01 84.8% 43.5%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 50.0 3.72e-01 97.8% 47.4%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.60 45.0 3.76e-01 89.1% 96.7%
3zgzD04 2.20.28.290 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.60 42.0 3.93e-01 78.3% 87.1%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 35.0 2.93e-01 89.1% 28.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 37.0 3.52e-01 100.0% 47.5%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 38.0 3.20e-01 100.0% 39.2%
2xhkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 40.0 3.05e-01 76.1% 33.3%
1oypA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.58 46.0 3.11e-01 100.0% 21.0%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 3.22e-01 100.0% 27.7%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 38.0 2.70e-01 100.0% 21.3%
3qjhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 3.68e-01 100.0% 69.2%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 3.57e-01 100.0% 58.9%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.56 40.0 3.27e-01 80.4% 50.5%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 3.25e-01 73.9% 72.1%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 40.0 3.14e-01 76.1% 70.5%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 43.0 3.55e-01 100.0% 57.4%
4ay0B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.85e-01 100.0% 97.6%
3hkmB00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.55 43.0 2.95e-01 100.0% 22.1%
1w4tA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.55 43.0 3.46e-01 100.0% 42.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.28e-01 73.9% 74.0%
5gvyA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.54 42.0 3.08e-01 91.3% 48.3%
1c7sA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.93e-01 97.8% 66.7%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.53 38.0 2.71e-01 82.6% 63.5%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.53 39.0 3.90e-01 100.0% 86.0%
3mhzA01 3.90.182.10 Alpha Beta › Alpha-Beta Complex › Toxin - Anthrax Protective Antigen; domain 1 › Toxin - Anthrax Protective Antigen;domain 1 0.53 45.0 2.91e-01 97.8% 29.7%
4a42A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 38.0 2.94e-01 80.4% 40.9%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.26e-01 93.5% 58.2%
3d4rE01 2.40.128.400 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.52e-01 100.0% 86.9%
2fauA01 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 2.96e-01 100.0% 53.0%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.51 42.0 3.22e-01 100.0% 58.2%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3486746 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.78 68.0 4.78e-01 100.0% 51.7%
4169665 2003.1.5.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.71 59.0 3.53e-01 97.8% 23.9%
3682418 11.1.1.416 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SPC22 0.71 62.0 4.72e-01 100.0% 44.4%
4026734 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.70 57.0 3.60e-01 93.5% 45.1%
4965895 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 47.0 3.73e-01 95.7% 35.0%
3384159 11.1.1.720 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IG_AIR9 0.67 55.0 4.53e-01 100.0% 58.9%
3640834 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.66 56.0 4.25e-01 100.0% 39.8%
3417568 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.66 53.0 4.31e-01 100.0% 60.2%
3312688 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.66 53.0 4.28e-01 100.0% 60.0%
3399617 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.65 55.0 4.53e-01 100.0% 51.1%
4942565 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 56.0 4.56e-01 100.0% 72.2%
3832766 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.65 53.0 4.26e-01 100.0% 60.6%
3251163 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.65 54.0 4.40e-01 95.7% 48.9%
3704521 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.65 53.0 4.59e-01 100.0% 56.2%
5779 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.65 53.0 4.46e-01 100.0% 51.7%
3686863 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.64 52.0 4.33e-01 97.8% 48.9%
3704713 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.64 52.0 4.50e-01 97.8% 56.2%
3274073 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.64 51.0 4.23e-01 100.0% 47.4%
3781882 2486.1.1.3 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.64 55.0 3.39e-01 100.0% 17.3%
3907819 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.64 54.0 4.57e-01 100.0% 56.2%
3880011 12.1.1.73 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GPS 0.63 45.0 3.67e-01 76.1% 54.1%
5783 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.63 53.0 4.35e-01 100.0% 50.6%
3528111 10.21.1.0 beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 0.63 46.0 3.50e-01 82.6% 51.2%
3801221 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.63 52.0 4.27e-01 100.0% 48.4%
3904649 12.5.1.2 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS 0.63 53.0 3.62e-01 100.0% 78.3%
3995005 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.63 53.0 4.45e-01 100.0% 54.1%
2850637 11.13.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.62 53.0 3.32e-01 100.0% 63.5%
3595361 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 51.0 4.20e-01 100.0% 60.0%
3971916 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.62 51.0 4.17e-01 100.0% 48.9%
5015352 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 38.0 3.21e-01 100.0% 33.7%
3228774 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.61 49.0 3.54e-01 100.0% 36.8%
3606610 11.1.1.720 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IG_AIR9 0.61 49.0 4.02e-01 100.0% 57.0%
3222896 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.61 49.0 4.26e-01 97.8% 56.2%
3218175 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.60 46.0 3.94e-01 93.5% 49.4%
3772640 10.21.1.1 beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.59 43.0 3.27e-01 80.4% 50.4%
5015065 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 42.0 2.90e-01 82.6% 51.0%
3585524 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.58 48.0 3.79e-01 100.0% 57.3%
5010338 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 41.0 3.24e-01 80.4% 32.2%
3579486 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 39.0 2.86e-01 71.7% 40.0%
3572785 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.58 40.0 2.99e-01 73.9% 40.0%
3733574 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.57 43.0 4.04e-01 100.0% 64.3%
3240098 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.57 49.0 3.86e-01 100.0% 65.7%
3725727 3792.1.1.0 beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain 0.56 44.0 3.69e-01 95.7% 48.2%
3960302 11.1.1.47 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_48 0.56 46.0 3.42e-01 100.0% 45.0%
3855038 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.56 36.0 2.55e-01 100.0% 17.5%
4579462 11.1.1.52 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CHB_HEX_C 0.55 42.0 3.91e-01 97.8% 64.6%
3276514 1169.1.1.2 a+b complex topology › Procyclic specific surface antigen-2 › Procyclic specific surface antigen-2 › Procyclic specific surface antigen-2 › DDB_G0273449 0.55 48.0 3.53e-01 100.0% 38.7%
3329569 11.1.1.720 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IG_AIR9 0.55 45.0 3.79e-01 100.0% 58.9%
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.55 37.0 3.34e-01 73.9% 76.0%
3971840 101.1.2.379 alpha arrays › HTH › HTH › winged helix domain › NGO1945_C 0.53 46.0 3.51e-01 100.0% 40.0%
3970435 101.1.2.379 alpha arrays › HTH › HTH › winged helix domain › NGO1945_C 0.53 46.0 3.46e-01 100.0% 38.7%
3553167 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 2.73e-01 82.6% 47.3%
4944751 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 35.0 2.77e-01 73.9% 46.7%
4048461 11.1.1.335 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N 0.51 41.0 3.34e-01 100.0% 53.3%
3942573 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 35.0 3.36e-01 73.9% 100.0%
3241122 109.4.1.1303 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_N, HAT_PRP39_C 0.51 35.0 2.14e-01 82.6% 8.6%
3875204 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 2.71e-01 78.3% 45.5%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.51 41.0 3.53e-01 91.3% 68.0%
5040531 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 34.0 2.71e-01 76.1% 56.0%