←Back to structures

MN988533.1__QIG73729.1__EVC05_037__00037

Bact-Vir

MN988533.1__QIG73729.1__EVC05_037__00037

Identity

Accession:
MN988533 ↗
Kingdom:
phage

Quality

83.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_N2

TaxID: 2509585

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-151
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04098.22 best Rad52_Rad22 54.0 2.50e-14 87.8% 84.3%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.71 66.0 6.67e-01 100.0% 96.6%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.57 25.0 3.30e-01 70.9% 72.6%
2pmeA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 40.0 3.19e-01 73.6% 89.8%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 27.0 3.71e-01 70.9% 97.1%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4137393 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.89 80.0 8.04e-01 100.0% 92.0%
3602244 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 45.0 4.57e-01 91.2% 82.6%
4997576 223.1.1.27 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.52 28.0 3.18e-01 70.3% 67.3%
3515384 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.51 34.0 3.42e-01 97.3% 65.3%
D2 high residues 173-224
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jpnA00 1.20.1280.210 Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1 0.79 69.0 6.04e-01 100.0% 69.6%
3bvoA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.79 69.0 5.84e-01 100.0% 84.9%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.78 68.0 5.41e-01 100.0% 62.3%
5cwhA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.78 67.0 4.79e-01 100.0% 35.9%
8fefH01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 63.0 3.88e-01 100.0% 16.7%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.75 63.0 5.73e-01 100.0% 79.5%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.73 62.0 4.88e-01 100.0% 50.0%
2mw2A00 1.20.1280.40 Mainly Alpha › Up-down Bundle › Monooxygenase › HHA 0.71 59.0 5.48e-01 96.2% 73.1%
5mmjb02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 51.0 5.15e-01 78.8% 76.9%
8sorA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.70 57.0 3.57e-01 100.0% 15.3%
2ygwA01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.70 58.0 4.19e-01 94.2% 62.7%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.69 56.0 3.73e-01 92.3% 37.6%
4f5cA04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.68 58.0 3.59e-01 100.0% 26.2%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 57.0 4.86e-01 100.0% 94.6%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 47.0 4.30e-01 75.0% 58.9%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 54.0 5.27e-01 100.0% 95.2%
1g5bB00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.67 58.0 3.86e-01 100.0% 43.9%
2oh3A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 54.0 4.10e-01 100.0% 90.3%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.64 55.0 4.79e-01 98.1% 85.2%
2l4bA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.62 43.0 3.57e-01 71.2% 89.8%
3amiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.62 45.0 3.11e-01 80.8% 64.8%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 41.0 2.77e-01 73.1% 17.3%
4fd4A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 52.0 3.47e-01 100.0% 32.1%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.56 46.0 3.76e-01 100.0% 98.2%
3hdiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.55 45.0 3.19e-01 100.0% 77.3%
2qsaA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.54 44.0 3.63e-01 92.3% 63.4%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 4.24e-01 90.4% 94.6%
2oifB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 34.0 2.62e-01 73.1% 86.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3824669 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.84 70.0 4.99e-01 100.0% 33.1%
3645380 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.84 70.0 4.70e-01 100.0% 25.9%
3817204 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.78 63.0 4.29e-01 100.0% 25.3%
3384110 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.77 63.0 4.39e-01 100.0% 28.2%
3917917 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.77 66.0 5.27e-01 100.0% 82.7%
3495915 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.77 66.0 4.18e-01 98.1% 35.8%
3383731 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.77 64.0 4.21e-01 100.0% 22.8%
3650245 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.75 61.0 4.47e-01 100.0% 32.7%
4983638 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.75 64.0 5.92e-01 100.0% 81.2%
3352832 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.75 63.0 4.59e-01 98.1% 34.5%
3597239 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 61.0 3.72e-01 100.0% 15.0%
4630964 610.1.1.1 ↗ alpha arrays › ERP29 C domain-like › ERP29 C domain-like › ERP29 C domain-like › ERp29 0.72 59.0 5.37e-01 98.1% 73.3%
1109551 604.17.1.1 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like › DUF447_C 0.71 58.0 5.48e-01 96.2% 92.4%
3935032 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.70 58.0 4.79e-01 100.0% 87.6%
3360431 4030.1.1.0 ↗ alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.68 58.0 5.49e-01 100.0% 89.2%
3312460 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 52.0 4.40e-01 100.0% 49.0%
3994165 633.16.1.0 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.65 55.0 4.87e-01 100.0% 76.2%
3927145 2007.2.3.21 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.64 54.0 3.43e-01 100.0% 99.7%
4016216 3594.1.1.0 ↗ alpha bundles › Oncogenic effector CagA domain III › Oncogenic effector CagA domain III › Oncogenic effector CagA domain III 0.64 55.0 4.24e-01 96.2% 53.0%
3588719 564.1.1.0 ↗ alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors 0.64 54.0 5.08e-01 96.2% 87.7%
3396076 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.56 39.0 3.59e-01 76.9% 78.7%