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MN988533.1__QIG73754.1__EVC05_062__00062

Bact-Vir

MN988533.1__QIG73754.1__EVC05_062__00062

Identity

Accession:
MN988533 ↗
Kingdom:
phage

Quality

85.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_N2

TaxID: 2509585

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-72
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 44.0 3.16e-01 100.0% 49.5%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.53 40.0 3.34e-01 100.0% 44.6%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 37.0 2.75e-01 100.0% 28.1%
3thpA02 2.60.120.1520 Mainly Beta › Sandwich › Jelly Rolls › 0.52 35.0 2.71e-01 100.0% 28.3%
4w6yA00 2.60.120.1210 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.30e-01 100.0% 40.4%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.64e-01 100.0% 65.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4951383 221.10.1.1 ↗ a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.62 52.0 4.76e-01 98.3% 92.5%
4226504 221.10.1.1 ↗ a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.60 50.0 4.40e-01 94.9% 93.3%
4133554 304.24.1.21 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III 0.57 49.0 3.48e-01 98.3% 55.3%
3707723 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 38.0 3.29e-01 72.9% 74.3%
3594241 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 36.0 2.88e-01 71.2% 68.1%
5007358 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.53 44.0 3.58e-01 100.0% 93.8%
3781077 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.53 37.0 3.08e-01 72.9% 72.8%
3596153 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 36.0 3.09e-01 74.6% 77.8%
5012981 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 3.18e-01 100.0% 51.8%