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MN988534.1__QIG73849.1__EVC06_074__00074

Bact-Vir

MN988534.1__QIG73849.1__EVC06_074__00074

Identity

Accession:
MN988534 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Trinifflemingvirus› Rhizobium_phage_RHph_N34

TaxID: 2509586

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-131
PDB
Domain cluster: rep: NC_070885.1__YP_010661711.1__PP936_gp073__00073__D138-225
D2 high residues 142-218
PDB
Domain cluster: rep: NC_070855.1__YP_010658252.1__PP749_gp041__00041__D179-254
D3 high residues 530-621
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7vi8A01 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.67 45.0 3.24e-01 96.7% 25.3%
1wy5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.66 45.0 3.43e-01 96.7% 30.0%
4rxtA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 43.0 3.66e-01 89.1% 39.9%
2zatA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 55.0 4.05e-01 98.9% 53.0%
5uj6A03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 55.0 3.78e-01 96.7% 33.5%
4xfjB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.62 39.0 3.20e-01 89.1% 33.5%
3awdA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 54.0 3.96e-01 100.0% 49.4%
1snyA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 53.0 3.95e-01 100.0% 59.3%
4ry8C02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 38.0 3.24e-01 98.9% 35.5%
3wtcA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 52.0 3.85e-01 98.9% 47.9%
3tjrA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 53.0 3.89e-01 100.0% 48.4%
2pqmB01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 43.0 3.21e-01 100.0% 29.6%
5unlB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 52.0 3.84e-01 100.0% 75.6%
3lf2A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 52.0 3.88e-01 100.0% 50.4%
3g1wA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 39.0 3.33e-01 88.0% 42.5%
6uqjA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 52.0 3.55e-01 100.0% 29.0%
3vzpC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 51.0 3.82e-01 98.9% 50.4%
3e9qA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 51.0 3.77e-01 100.0% 69.4%
4iiuC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 51.0 3.82e-01 98.9% 51.7%
5ix8A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 39.0 3.31e-01 100.0% 40.3%
3l77A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 50.0 3.80e-01 100.0% 50.2%
3vc7A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 50.0 3.79e-01 100.0% 49.8%
2vk2A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 40.0 3.31e-01 88.0% 41.2%
6gt9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 38.0 3.13e-01 87.0% 37.9%
1e6uA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 48.0 3.73e-01 100.0% 56.8%
2x7xA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 38.0 3.38e-01 88.0% 48.6%
5dwzC01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 42.0 3.33e-01 88.0% 40.5%
7e24A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 47.0 3.54e-01 98.9% 51.5%
6uh2A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 47.0 3.56e-01 100.0% 42.2%
1edzA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.53 36.0 3.30e-01 100.0% 50.4%
1hnnA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 42.0 3.05e-01 98.9% 30.7%
4gm2A00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.53 45.0 3.73e-01 100.0% 81.4%
1p9oA00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.52 45.0 3.23e-01 94.6% 67.3%
7aj0A01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.52 45.0 3.02e-01 100.0% 29.2%
7w8fA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.52 36.0 3.18e-01 100.0% 47.5%
2q02A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.50 44.0 3.22e-01 100.0% 36.4%
6aikB00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.50 44.0 3.12e-01 100.0% 68.8%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4202670 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.68 45.0 3.41e-01 88.0% 28.0%
3216159 2007.5.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase 0.64 56.0 3.94e-01 100.0% 31.4%
3776724 2007.5.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase 0.64 54.0 3.85e-01 100.0% 31.3%
2088112 2002.1.1.104 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_2_C 0.63 55.0 3.78e-01 96.7% 33.8%
3735645 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.61 54.0 3.99e-01 100.0% 72.3%
4952488 2007.1.3.19 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › DUF116 0.61 37.0 3.01e-01 98.9% 32.7%
3246245 2005.1.1.36 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.61 42.0 3.44e-01 98.9% 36.7%
3957898 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.61 54.0 3.88e-01 100.0% 45.9%
3314837 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.61 54.0 3.73e-01 100.0% 38.4%
4100587 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 39.0 3.37e-01 88.0% 40.7%
3961520 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.61 54.0 4.05e-01 100.0% 54.1%
3721088 2003.1.1.69 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.60 53.0 3.76e-01 100.0% 41.0%
3729950 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.60 53.0 3.99e-01 98.9% 60.0%
3236708 2003.1.1.148 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short, KR 0.60 53.0 3.88e-01 100.0% 57.9%
None — 0.60 52.0 3.74e-01 98.9% 42.8%
3832532 4143.1.1.0 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like 0.60 46.0 3.92e-01 82.6% 54.7%
5010650 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.60 53.0 3.99e-01 98.9% 54.7%
4963069 2003.1.1.69 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.59 52.0 3.91e-01 100.0% 52.3%
3279975 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.59 52.0 4.17e-01 98.9% 65.9%
3416022 2007.1.2.30 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › IR75A_N 0.59 53.0 4.04e-01 98.9% 51.7%
4014384 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.58 51.0 3.64e-01 100.0% 41.0%
1252797 2007.1.2.11 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 0.58 40.0 3.56e-01 88.0% 49.6%
3662429 4143.1.1.0 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like 0.57 43.0 3.90e-01 81.5% 59.2%
3934668 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.57 48.0 3.43e-01 96.7% 30.9%
3640758 2003.1.1.69 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.56 49.0 3.71e-01 100.0% 55.9%
5075582 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.56 43.0 3.31e-01 88.0% 34.3%
3586023 7570.1.1.0 ↗ a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain 0.56 42.0 3.94e-01 88.0% 65.2%
3194024 2003.1.6.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Misat_Tub_SegII+Tubulin_3 0.55 49.0 3.59e-01 100.0% 49.6%
5041206 2007.1.14.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.55 45.0 3.62e-01 95.7% 43.6%
None — 0.55 47.0 2.88e-01 96.7% 15.5%
3988989 2007.1.14.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase 0.55 43.0 3.08e-01 88.0% 27.1%
5042052 7555.1.1.2 ↗ a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › MptE-like 0.54 41.0 3.18e-01 89.1% 34.5%
4927826 2004.1.1.206 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.54 43.0 3.08e-01 87.0% 34.1%
4129788 2007.1.14.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase 0.54 43.0 3.54e-01 88.0% 48.0%
5057926 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.54 45.0 3.23e-01 94.6% 33.3%
4419487 2003.1.1.61 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR 0.54 46.0 3.75e-01 100.0% 68.7%
5072202 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.54 40.0 3.21e-01 88.0% 38.9%
3339462 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.54 39.0 2.71e-01 77.2% 66.3%
4026296 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.53 47.0 3.34e-01 100.0% 70.8%
5045075 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 46.0 3.96e-01 97.8% 66.0%
None — 0.53 44.0 2.80e-01 95.7% 81.1%
3613442 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 42.0 3.21e-01 88.0% 81.4%
3206956 2004.1.1.186 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 0.51 37.0 2.71e-01 94.6% 25.9%
3450611 2006.1.1.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › PNK3P 0.50 39.0 3.36e-01 100.0% 50.0%
3637147 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.50 44.0 3.17e-01 100.0% 77.4%
D4 medium residues 227-240_419-529
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7toiA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.67 55.0 4.54e-01 86.4% 70.2%
2q0qA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.63 50.0 4.10e-01 82.4% 47.9%
1zmbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.59 52.0 4.18e-01 97.6% 51.4%
3milB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.58 46.0 3.71e-01 84.0% 63.0%
7tjbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.57 44.0 3.73e-01 81.6% 65.5%
2eaxA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.53 43.0 3.95e-01 86.4% 87.2%
4lhsA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 45.0 3.94e-01 96.0% 66.0%
2os5A00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.51 30.0 3.11e-01 85.6% 60.2%
6su5A01 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.50 41.0 3.89e-01 89.6% 90.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3452250 2007.5.1.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › SASA 0.67 54.0 4.34e-01 87.2% 74.0%
3291200 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.59 46.0 3.75e-01 81.6% 60.0%
178870 2007.5.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.58 46.0 3.70e-01 84.0% 62.5%
3398751 7541.1.1.1 ↗ a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.57 37.0 3.37e-01 79.2% 46.9%
4541198 7541.1.1.1 ↗ a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.56 38.0 3.49e-01 80.8% 52.7%
5077512 7541.1.1.1 ↗ a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.55 36.0 3.42e-01 80.0% 54.2%
3254493 2004.1.1.153 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 0.55 41.0 3.26e-01 80.0% 76.2%
144048 7515.1.1.6 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest 0.54 42.0 3.31e-01 82.4% 94.5%
4029430 7579.1.1.74 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › C2orf69 0.52 45.0 3.47e-01 96.0% 70.3%
5030671 7546.1.1.1 ↗ a/b three-layered sandwiches › Glutaminase/Asparaginase N-terminal domain › Glutaminase/Asparaginase N-terminal domain › Glutaminase/Asparaginase N-terminal domain › Asparaginase 0.52 39.0 3.72e-01 92.8% 64.5%
5079134 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.52 43.0 3.18e-01 90.4% 61.7%
4975758 7546.1.1.1 ↗ a/b three-layered sandwiches › Glutaminase/Asparaginase N-terminal domain › Glutaminase/Asparaginase N-terminal domain › Glutaminase/Asparaginase N-terminal domain › Asparaginase 0.52 40.0 3.70e-01 80.8% 96.9%
3822485 2006.1.1.3 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase 0.51 37.0 3.16e-01 76.8% 95.3%
3685824 7579.1.1.99 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4, Abhydrolase_6 0.51 42.0 3.10e-01 91.2% 64.2%
5029246 7546.1.1.1 ↗ a/b three-layered sandwiches › Glutaminase/Asparaginase N-terminal domain › Glutaminase/Asparaginase N-terminal domain › Glutaminase/Asparaginase N-terminal domain › Asparaginase 0.50 38.0 3.32e-01 82.4% 78.5%
4291321 2007.12.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Beta-D-glucan exohydrolase, C-terminal domain › Beta-D-glucan exohydrolase, C-terminal domain › Glyco_hydro_3_C 0.50 39.0 3.10e-01 82.4% 40.8%
D5 medium residues 241-418
PDB
Domain cluster: rep: KJ746502.1__AID18345.1__PPF1_32__00032__D9-160
D6 medium residues 622-738
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 45.0 5.42e-01 76.9% 100.0%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.70 51.0 5.83e-01 88.9% 100.0%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.70 48.0 5.51e-01 70.9% 97.8%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 46.0 5.41e-01 76.9% 100.0%
7syvx01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.69 51.0 4.83e-01 76.1% 87.6%
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.68 52.0 5.73e-01 84.6% 98.9%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.68 50.0 3.36e-01 76.1% 25.8%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.68 43.0 5.20e-01 77.8% 100.0%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 45.0 5.16e-01 70.1% 95.4%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.64 48.0 5.35e-01 77.8% 100.0%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 42.0 4.96e-01 77.8% 100.0%
1zunB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 45.0 5.09e-01 78.6% 95.6%
1ep3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 47.0 5.06e-01 76.9% 100.0%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.62 43.0 4.46e-01 76.9% 75.7%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.62 46.0 5.13e-01 81.2% 100.0%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 42.0 4.83e-01 79.5% 100.0%
2ra1A04 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 39.0 4.24e-01 78.6% 79.4%
3dclA02 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 44.0 4.92e-01 84.6% 100.0%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.59 42.0 4.27e-01 72.6% 96.4%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.59 44.0 4.17e-01 78.6% 96.5%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 31.0 4.00e-01 76.1% 95.3%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 43.0 4.70e-01 80.3% 100.0%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 36.0 4.26e-01 76.1% 95.0%
1vwxf00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.56 45.0 4.72e-01 87.2% 100.0%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 41.0 4.33e-01 79.5% 93.4%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 35.0 3.85e-01 78.6% 79.2%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.55 31.0 3.49e-01 80.3% 74.1%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.54 42.0 3.99e-01 84.6% 69.6%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.54 39.0 4.02e-01 74.4% 100.0%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 38.0 4.22e-01 79.5% 98.9%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 33.0 3.64e-01 78.6% 82.0%
1a3qA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 4.01e-01 78.6% 91.8%
2c9aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 34.0 3.67e-01 82.9% 83.5%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3387360 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.76 49.0 5.65e-01 76.9% 89.4%
4162532 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.75 47.0 5.76e-01 76.9% 98.7%
4995824 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 46.0 5.67e-01 74.4% 100.0%
3978877 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 55.0 6.18e-01 94.0% 100.0%
4403870 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 47.0 5.17e-01 79.5% 80.0%
3967745 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 46.0 5.63e-01 75.2% 100.0%
4319764 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 50.0 5.21e-01 86.3% 75.5%
4055193 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.72 55.0 6.04e-01 88.9% 96.8%
4519111 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.72 53.0 5.97e-01 88.0% 100.0%
4660673 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 49.0 5.64e-01 82.1% 97.6%
4010630 2004.1.1.10 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.71 50.0 3.35e-01 84.6% 19.8%
4060133 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.71 52.0 5.89e-01 85.5% 98.9%
5037173 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 50.0 5.51e-01 73.5% 96.8%
4636885 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 45.0 5.42e-01 76.9% 100.0%
4423739 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.70 55.0 5.99e-01 91.5% 100.0%
4042679 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.70 50.0 5.76e-01 83.8% 100.0%
2556060 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.70 46.0 5.50e-01 80.3% 100.0%
4438946 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.70 49.0 5.72e-01 81.2% 100.0%
4521547 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.70 51.0 5.73e-01 88.9% 97.8%
3720023 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 48.0 5.16e-01 70.9% 100.0%
4083333 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.69 53.0 5.77e-01 88.0% 97.9%
4211588 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 53.0 3.49e-01 87.2% 20.2%
3596642 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 45.0 5.15e-01 77.8% 90.6%
4581837 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.69 51.0 5.72e-01 88.0% 100.0%
5026244 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 48.0 5.33e-01 70.9% 100.0%
4395103 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 51.0 5.73e-01 91.5% 100.0%
4229140 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.69 51.0 5.73e-01 84.6% 100.0%
4952899 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 46.0 5.37e-01 82.1% 100.0%
5017568 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.68 46.0 5.39e-01 76.1% 100.0%
4051652 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 52.0 5.73e-01 90.6% 98.9%
4366483 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.68 48.0 5.47e-01 81.2% 100.0%
4391995 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 48.0 5.48e-01 84.6% 100.0%
4002775 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 50.0 4.91e-01 76.1% 88.0%
4098005 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 50.0 5.62e-01 84.6% 100.0%
4399542 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 49.0 5.49e-01 84.6% 98.9%
4087903 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 50.0 5.57e-01 85.5% 100.0%
4493188 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 50.0 5.47e-01 88.0% 95.8%
4391792 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 52.0 5.73e-01 85.5% 100.0%
4071868 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 49.0 5.49e-01 88.0% 100.0%
4353877 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 51.0 5.54e-01 88.0% 98.9%
4854964 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.66 46.0 5.27e-01 71.8% 97.7%
4395520 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 50.0 5.49e-01 91.5% 97.9%
4883586 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 45.0 5.13e-01 72.6% 95.3%
4945652 1.1.7.143 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › IF-2 0.66 50.0 4.99e-01 78.6% 88.3%
4208972 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 51.0 5.44e-01 91.5% 95.0%
4425722 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 48.0 5.41e-01 87.2% 100.0%
4205951 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 50.0 5.50e-01 88.9% 98.9%
4662737 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 48.0 5.42e-01 88.0% 100.0%
4946634 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 45.0 5.07e-01 79.5% 92.2%
4666540 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 46.0 5.29e-01 83.8% 100.0%
5035411 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 49.0 4.94e-01 77.8% 87.0%
4220217 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 48.0 5.20e-01 88.9% 95.8%
4381868 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 46.0 5.16e-01 84.6% 98.9%
4172288 1.1.7.8 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.63 46.0 5.18e-01 76.9% 98.9%
3243970 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 49.0 5.23e-01 81.2% 99.0%
3801941 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.62 44.0 4.43e-01 72.6% 91.3%
3868227 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 43.0 4.71e-01 79.5% 92.6%
5043602 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 40.0 4.39e-01 81.2% 84.2%
3688604 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.60 43.0 4.49e-01 73.5% 84.8%
4995368 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.60 40.0 3.88e-01 84.6% 59.3%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.60 38.0 4.60e-01 76.1% 100.0%
3594697 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 45.0 4.46e-01 81.2% 83.2%
3227251 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 44.0 4.51e-01 81.2% 100.0%
3264338 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 4.41e-01 81.2% 97.8%
3685973 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 4.06e-01 80.3% 84.8%
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 31.0 3.88e-01 76.9% 98.5%
3549321 4.11.1.5 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.54 40.0 3.61e-01 76.9% 70.6%
4032514 1.1.5.16 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.54 43.0 3.59e-01 86.3% 82.0%
4946793 11.1.1.1392 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Metallophos 0.54 37.0 3.72e-01 78.6% 69.2%
3269635 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.99e-01 82.1% 86.0%
4026937 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 3.68e-01 78.6% 78.1%
3192718 12.1.1.34 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.51 35.0 3.45e-01 84.6% 64.3%
5035550 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 36.0 3.79e-01 80.3% 86.0%