←Back to structures

MN988534.1__QIG73940.1__EVC06_165__00165

Bact-Vir

MN988534.1__QIG73940.1__EVC06_165__00165

Identity

Accession:
MN988534 ↗
Kingdom:
phage

Quality

84.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Trinifflemingvirus› Rhizobium_phage_RHph_N34

TaxID: 2509586

Cluster

View cluster (26 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-52
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xgqA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.66 53.0 3.97e-01 96.2% 35.6%
2cufA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 47.0 4.21e-01 82.7% 58.3%
3dl1A01 1.10.472.150 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Glucose-regulated metallo-peptidase M90, N-terminal domain 0.62 55.0 4.46e-01 100.0% 79.8%
7jpxA02 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.60 51.0 3.98e-01 98.1% 52.1%
4n81A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.58 49.0 3.63e-01 94.2% 66.9%
1hk3A03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 45.0 3.74e-01 94.2% 48.9%
7d3uC01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 44.0 3.54e-01 86.5% 51.4%
2qkdA04 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.53 41.0 3.20e-01 88.5% 67.7%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 3.84e-01 92.3% 80.2%
1lciA01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 43.0 3.11e-01 90.4% 97.4%
1gq1A01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.51 39.0 3.20e-01 86.5% 88.0%
3c4rA00 1.10.3600.10 Mainly Alpha › Orthogonal Bundle › uncharacterized protein encoded by cryptic prophage fold › Putative bacterial toxin ydaT 0.51 40.0 3.13e-01 90.4% 41.9%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587994 3962.1.1.0 ↗ alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit 0.76 50.0 4.55e-01 86.5% 51.4%
5062246 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.71 60.0 4.77e-01 94.2% 54.3%
4129265 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.66 54.0 4.04e-01 96.2% 36.2%
3205865 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.64 40.0 3.12e-01 86.5% 29.1%
4176207 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 47.0 3.36e-01 78.8% 32.0%
3197721 633.1.1.5 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › DUF7877 0.58 42.0 3.22e-01 76.9% 77.4%
3723286 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.56 45.0 2.84e-01 88.5% 18.1%
4557682 5063.1.1.21 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Transgly_assoc 0.55 44.0 3.96e-01 90.4% 70.7%
3599564 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 47.0 3.74e-01 100.0% 61.8%
4158780 129.1.1.15 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.52 41.0 3.20e-01 90.4% 54.2%
5017863 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.51 44.0 2.77e-01 96.2% 37.6%
D2 medium residues 53-114
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zopA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.65 49.0 4.12e-01 83.9% 48.2%
2yskA00 1.10.490.110 Mainly Alpha › Orthogonal Bundle › Globin-like › Uncharacterized conserved protein DUF2267 0.65 45.0 3.44e-01 72.6% 91.7%
3eofB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.58 41.0 2.85e-01 77.4% 21.2%
3h5tA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 39.0 4.27e-01 71.0% 95.7%
5ekdA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.54 42.0 3.47e-01 83.9% 46.8%
1gyzA00 1.10.1900.20 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Ribosomal protein L20, C-terminal domain 0.54 43.0 4.44e-01 88.7% 93.3%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.53 38.0 3.06e-01 79.0% 65.4%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3202181 101.1.11.120 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_ERCC6L2 0.71 50.0 5.33e-01 79.0% 92.0%
4481619 6056.1.1.2 ↗ alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.69 44.0 4.23e-01 74.2% 57.1%
3750083 142.1.1.17 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SPATIAL 0.56 46.0 4.70e-01 98.4% 100.0%
3972303 103.16.1.0 ↗ alpha arrays › RuvA-C › C-P lyase subunit PhnI N-terminal domain › C-P lyase subunit PhnI N-terminal domain 0.53 37.0 3.41e-01 88.7% 55.3%
1680481 103.16.1.1 ↗ alpha arrays › RuvA-C › C-P lyase subunit PhnI N-terminal domain › C-P lyase subunit PhnI N-terminal domain › PhnI 0.52 37.0 3.44e-01 88.7% 55.8%
4944760 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 34.0 3.46e-01 82.3% 70.0%