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MN988534.1__QIG74024.1__EVC06_249__00249
Bact-VirMN988534.1__QIG74024.1__EVC06_249__00249
Identity
- Accession:
- MN988534 ↗
- Kingdom:
- phage
Quality
86.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pootjesviridae›
Trinifflemingvirus›
Rhizobium_phage_RHph_N34
TaxID: 2509586
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-82
Domain cluster:
rep: MN988486.1__QIG68187.1__EVB55_252__00252__D3-74
D2
high
residues 86-210
Domain cluster:
rep: hypothetical_protein_H012_gp547__YP_007354351__Acanthamoeba_polyphaga_moumouvirus__1269028__D8-131
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25176.3 best | DUF7831 | 134.9 | 1.70e-39 | 92.8% | 98.3% |
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2afcA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.62 | 57.0 | 5.31e-01 | 100.0% | 94.1% |
| 2jk1A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 37.0 | 3.59e-01 | 85.6% | 51.4% |
| 2vqmA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.61 | 55.0 | 3.89e-01 | 99.2% | 46.5% |
| 2v5wB00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.61 | 55.0 | 3.94e-01 | 99.2% | 46.9% |
| 5g0gA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.60 | 54.0 | 3.87e-01 | 98.4% | 50.6% |
| 2ht1A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 54.0 | 4.43e-01 | 100.0% | 60.9% |
| 5ji5A00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.59 | 52.0 | 3.98e-01 | 100.0% | 52.5% |
| 2au3A03 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.58 | 38.0 | 3.82e-01 | 92.0% | 64.5% |
| 1r6hA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 46.0 | 4.16e-01 | 100.0% | 63.4% |
| 4emyA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.57 | 51.0 | 4.11e-01 | 98.4% | 74.4% |
| 1fpzC00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 48.0 | 4.34e-01 | 93.6% | 85.4% |
| 3gv0A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 36.0 | 3.59e-01 | 88.0% | 59.6% |
| 2xdqA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.57 | 44.0 | 4.37e-01 | 95.2% | 78.7% |
| 5g0xA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.56 | 49.0 | 3.56e-01 | 97.6% | 88.9% |
| 3gxhA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.56 | 48.0 | 4.48e-01 | 93.6% | 84.6% |
| 2ynmC02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.56 | 44.0 | 4.30e-01 | 96.0% | 77.0% |
| 2b69A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 48.0 | 3.96e-01 | 95.2% | 63.4% |
| 3ndcA01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.55 | 42.0 | 4.45e-01 | 100.0% | 92.0% |
| 3pdiB01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 42.0 | 4.09e-01 | 95.2% | 74.5% |
| 3ckmA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 35.0 | 3.12e-01 | 88.0% | 45.8% |
| 2w5qA02 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.53 | 47.0 | 3.59e-01 | 100.0% | 70.7% |
| 2esbA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 44.0 | 4.13e-01 | 92.0% | 80.2% |
| 4bucA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 37.0 | 4.17e-01 | 87.2% | 94.7% |
| 2f46A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 41.0 | 4.00e-01 | 96.8% | 73.2% |
| 4q05A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 44.0 | 3.34e-01 | 92.8% | 52.3% |
| 4jejA00 | 3.20.20.390 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › FMN-linked oxidoreductases | 0.53 | 45.0 | 3.72e-01 | 96.0% | 90.9% |
| 1yn9B00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 45.0 | 4.16e-01 | 96.8% | 71.0% |
| 4ry8C02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 39.0 | 3.64e-01 | 96.0% | 60.8% |
| 3k5wA01 | 3.40.50.10260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain | 0.52 | 42.0 | 3.60e-01 | 95.2% | 53.4% |
| 2p4dA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 44.0 | 4.03e-01 | 93.6% | 82.2% |
| 2j16A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 44.0 | 4.34e-01 | 93.6% | 88.0% |
| 6bs3B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 44.0 | 3.35e-01 | 96.8% | 91.4% |
| 1w25A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 38.0 | 3.69e-01 | 88.8% | 70.2% |
| 2x5oA03 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.51 | 44.0 | 4.32e-01 | 97.6% | 89.6% |
| 5elmA02 | 3.40.50.1860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 39.0 | 4.12e-01 | 96.8% | 93.8% |
| 6e4bA00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.50 | 45.0 | 3.87e-01 | 100.0% | 90.1% |
| 1h2eA00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.50 | 45.0 | 3.85e-01 | 100.0% | 88.9% |
| 4basA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 44.0 | 3.96e-01 | 96.0% | 82.6% |
| 3nraA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.50 | 44.0 | 3.64e-01 | 96.8% | 55.7% |
| 5swcD00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.50 | 42.0 | 3.59e-01 | 92.0% | 75.7% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4941533 | 2006.1.5.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Hist_deacetyl | 0.61 | 55.0 | 4.15e-01 | 99.2% | 58.0% |
| 3487184 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.61 | 42.0 | 3.84e-01 | 95.2% | 53.3% |
| 4180126 | 2002.1.1.57 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D | 0.60 | 54.0 | 3.97e-01 | 100.0% | 64.9% |
| 5016918 | 2003.1.1.50 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DUF364 | 0.59 | 44.0 | 4.28e-01 | 95.2% | 71.9% |
| 4986317 | 2006.1.5.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Hist_deacetyl | 0.58 | 51.0 | 4.00e-01 | 98.4% | 86.4% |
| 4956039 | 2007.1.13.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase | 0.58 | 42.0 | 4.03e-01 | 88.8% | 65.7% |
| 4522664 | 2002.1.1.8 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase | 0.58 | 52.0 | 3.52e-01 | 100.0% | 95.2% |
| 3960524 | 7550.1.1.0 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain | 0.57 | 52.0 | 5.15e-01 | 100.0% | 96.2% |
| 164866 | 2007.1.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › Asp_Glu_race | 0.57 | 40.0 | 4.28e-01 | 84.8% | 86.7% |
| 3647294 | 2006.1.5.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Hist_deacetyl | 0.57 | 50.0 | 4.26e-01 | 100.0% | 60.0% |
| 4040222 | 2007.1.2.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Glyco_tran_WecG | 0.56 | 40.0 | 4.21e-01 | 96.8% | 83.6% |
| 3727490 | 7550.1.1.1 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase | 0.56 | 45.0 | 4.68e-01 | 99.2% | 93.9% |
| 1839267 | 2007.1.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like | 0.56 | 40.0 | 3.74e-01 | 99.2% | 57.7% |
| 4211713 | 7550.1.1.1 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase | 0.55 | 42.0 | 4.41e-01 | 100.0% | 90.9% |
| 4956204 | 2007.1.5.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG | 0.55 | 41.0 | 4.29e-01 | 96.0% | 86.8% |
| 3749861 | 2004.1.1.208 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 | 0.54 | 41.0 | 3.70e-01 | 92.8% | 57.7% |
| 3500722 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.54 | 42.0 | 4.21e-01 | 98.4% | 83.2% |
| None | — | 0.54 | 38.0 | 3.39e-01 | 100.0% | 50.6% | |
| 3164628 | 7570.1.1.1 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C | 0.53 | 47.0 | 4.56e-01 | 97.6% | 91.4% |
| 1544420 | 2004.1.1.21 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA | 0.53 | 46.0 | 4.03e-01 | 100.0% | 62.2% |
| None | — | 0.53 | 44.0 | 3.38e-01 | 92.8% | 60.6% | |
| 4379686 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 47.0 | 4.11e-01 | 100.0% | 96.4% |
| 4979473 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.53 | 47.0 | 3.97e-01 | 100.0% | 83.6% |
| 3500601 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.53 | 44.0 | 4.04e-01 | 100.0% | 67.6% |
| 3906276 | 2007.5.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase | 0.53 | 47.0 | 3.83e-01 | 100.0% | 69.8% |
| 3614639 | 7525.1.1.0 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like | 0.52 | 47.0 | 3.68e-01 | 99.2% | 92.5% |
| 3189232 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.52 | 46.0 | 3.39e-01 | 98.4% | 51.6% |
| 3717143 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.52 | 46.0 | 3.87e-01 | 100.0% | 85.0% |
| 3944911 | 7579.1.1.18 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_2 | 0.52 | 43.0 | 3.70e-01 | 93.6% | 95.8% |
| 2783421 | 7559.1.1.1 ↗ | a/b three-layered sandwiches › Ribosomal protein L4 › Ribosomal protein L4 › Ribosomal protein L4 › Ribosomal_L4 | 0.51 | 37.0 | 2.99e-01 | 91.2% | 37.2% |
| 3630049 | 7577.1.1.16 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › PDXDC1-like_cen2 | 0.51 | 43.0 | 2.83e-01 | 96.8% | 20.9% |
| 4993071 | 2004.1.1.66 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 | 0.51 | 46.0 | 3.91e-01 | 100.0% | 70.2% |
| 3956038 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.51 | 45.0 | 3.89e-01 | 100.0% | 92.2% |
| 5027681 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.51 | 45.0 | 3.84e-01 | 100.0% | 85.1% |
| 5005694 | 7574.1.1.5 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › TPP_enzyme_C | 0.51 | 43.0 | 3.39e-01 | 94.4% | 96.4% |
| 5057287 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.50 | 40.0 | 3.62e-01 | 85.6% | 84.6% |
| 3510451 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.50 | 45.0 | 3.85e-01 | 100.0% | 89.3% |