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MN988534.1__QIG74026.1__EVC06_251__00251
Bact-VirMN988534.1__QIG74026.1__EVC06_251__00251
Identity
- Accession:
- MN988534 ↗
- Kingdom:
- phage
Quality
69.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pootjesviridae›
Trinifflemingvirus›
Rhizobium_phage_RHph_N34
TaxID: 2509586
Cluster
View cluster (20 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-70
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2efiA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 45.0 | 3.92e-01 | 75.0% | 40.0% |
| 2cg7A01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.73 | 43.0 | 5.06e-01 | 97.1% | 87.0% |
| 2j3vA02 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.71 | 59.0 | 4.13e-01 | 91.2% | 63.2% |
| 1o9aA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.68 | 38.0 | 4.50e-01 | 97.1% | 84.1% |
| 5i7pA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.67 | 44.0 | 5.00e-01 | 89.7% | 95.8% |
| 4dywA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.65 | 57.0 | 4.66e-01 | 100.0% | 67.4% |
| 3p26A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.65 | 54.0 | 4.65e-01 | 92.6% | 63.6% |
| 3gg6A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.65 | 58.0 | 4.53e-01 | 100.0% | 57.6% |
| 1f60A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 53.0 | 4.60e-01 | 92.6% | 64.8% |
| 3wndA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 51.0 | 4.60e-01 | 92.6% | 64.9% |
| 5k9aA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.61 | 53.0 | 3.79e-01 | 100.0% | 48.4% |
| 1r5bA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 49.0 | 4.28e-01 | 92.6% | 62.7% |
| 2kw8A00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.60 | 52.0 | 4.04e-01 | 100.0% | 63.3% |
| 4ld6A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 45.0 | 3.79e-01 | 80.9% | 72.6% |
| 4d70A00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.59 | 52.0 | 4.01e-01 | 100.0% | 61.9% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 44.0 | 4.36e-01 | 98.5% | 74.3% |
| 1g7sA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 50.0 | 4.35e-01 | 97.1% | 71.3% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 41.0 | 3.59e-01 | 76.5% | 80.6% |
| 3nrlA00 | 2.40.10.390 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.56 | 42.0 | 4.28e-01 | 98.5% | 79.4% |
| 4y4qA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.56 | 48.0 | 3.65e-01 | 100.0% | 86.8% |
| 4v19O00 | 2.40.150.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 | 0.55 | 49.0 | 4.12e-01 | 100.0% | 67.0% |
| 2crvA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 46.0 | 4.25e-01 | 100.0% | 81.7% |
| 1oeyL00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 45.0 | 4.12e-01 | 98.5% | 88.8% |
| 2daqA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 38.0 | 3.24e-01 | 76.5% | 78.2% |
| 2xrcC04 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 41.0 | 3.14e-01 | 98.5% | 34.3% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3570369 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.77 | 51.0 | 4.62e-01 | 79.4% | 51.1% |
| 3256053 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.76 | 51.0 | 4.61e-01 | 77.9% | 52.2% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.75 | 52.0 | 5.05e-01 | 77.9% | 65.3% |
| 3627576 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 48.0 | 4.90e-01 | 73.5% | 67.7% |
| 3584555 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.75 | 47.0 | 4.73e-01 | 73.5% | 62.9% |
| 5054112 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 55.0 | 5.65e-01 | 77.9% | 87.7% |
| 3399965 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 49.0 | 4.45e-01 | 79.4% | 54.4% |
| 3942928 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.70 | 63.0 | 5.86e-01 | 100.0% | 82.4% |
| 3791752 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 45.0 | 4.63e-01 | 76.5% | 69.2% |
| 4967823 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.69 | 61.0 | 5.96e-01 | 97.1% | 94.7% |
| 3730835 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.69 | 46.0 | 4.06e-01 | 76.5% | 48.4% |
| 3216974 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.69 | 48.0 | 4.57e-01 | 73.5% | 73.8% |
| 3826141 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 50.0 | 4.57e-01 | 77.9% | 67.8% |
| 4003477 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.68 | 50.0 | 4.38e-01 | 77.9% | 70.0% |
| 3933135 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.68 | 50.0 | 3.68e-01 | 77.9% | 34.3% |
| 2756432 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.67 | 57.0 | 4.46e-01 | 92.6% | 50.0% |
| 5032025 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 60.0 | 5.21e-01 | 100.0% | 76.2% |
| 4549698 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.67 | 46.0 | 4.06e-01 | 75.0% | 50.5% |
| 4947591 | 1.1.7.140 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF87 | 0.67 | 60.0 | 5.01e-01 | 100.0% | 79.1% |
| 4932663 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.66 | 56.0 | 4.74e-01 | 92.6% | 63.6% |
| 3492680 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.66 | 56.0 | 4.63e-01 | 92.6% | 74.2% |
| 5037458 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 58.0 | 4.86e-01 | 100.0% | 75.0% |
| 3270372 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.66 | 55.0 | 4.62e-01 | 92.6% | 60.0% |
| 3578245 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.65 | 55.0 | 4.55e-01 | 92.6% | 58.3% |
| 3699413 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.65 | 55.0 | 4.70e-01 | 92.6% | 64.2% |
| 1138674 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.65 | 54.0 | 4.65e-01 | 92.6% | 63.6% |
| 3608683 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.65 | 54.0 | 4.40e-01 | 92.6% | 53.8% |
| 4956935 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.65 | 59.0 | 4.97e-01 | 100.0% | 77.3% |
| 5002756 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.65 | 56.0 | 5.47e-01 | 95.6% | 94.7% |
| 4288082 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.65 | 54.0 | 4.93e-01 | 92.6% | 77.8% |
| 5064148 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 57.0 | 4.91e-01 | 100.0% | 79.1% |
| 3603398 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.64 | 54.0 | 4.63e-01 | 92.6% | 91.7% |
| 5055336 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.64 | 50.0 | 4.59e-01 | 92.6% | 64.4% |
| 5016691 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.64 | 58.0 | 5.41e-01 | 100.0% | 80.0% |
| 3270538 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.64 | 53.0 | 4.36e-01 | 92.6% | 58.4% |
| 5078127 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.64 | 54.0 | 5.00e-01 | 92.6% | 98.8% |
| 3665168 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.63 | 53.0 | 4.40e-01 | 92.6% | 65.8% |
| 4868829 | 290.1.1.1 ↗ | beta barrels › Sortase › Sortase › Sortase › Sortase | 0.63 | 54.0 | 4.50e-01 | 97.1% | 82.3% |
| 4988604 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.63 | 56.0 | 4.78e-01 | 100.0% | 74.5% |
| 4192972 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.62 | 56.0 | 4.85e-01 | 100.0% | 78.1% |
| 5078822 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.62 | 56.0 | 4.71e-01 | 100.0% | 79.1% |
| 5015822 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.62 | 55.0 | 4.73e-01 | 100.0% | 73.6% |
| 5040464 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 54.0 | 4.82e-01 | 100.0% | 69.5% |
| 1414910 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.62 | 55.0 | 4.75e-01 | 100.0% | 77.4% |
| 3476615 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 50.0 | 4.79e-01 | 100.0% | 75.0% |
| 5053822 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 55.0 | 4.46e-01 | 100.0% | 73.1% |
| 5042815 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.62 | 56.0 | 5.29e-01 | 100.0% | 87.5% |
| 3219409 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 41.0 | 3.77e-01 | 76.5% | 52.2% |
| 5028172 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 54.0 | 4.51e-01 | 100.0% | 75.0% |
| 3513418 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.61 | 38.0 | 4.59e-01 | 95.6% | 97.8% |
| 4934423 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 53.0 | 4.59e-01 | 100.0% | 75.5% |
| 4932728 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 51.0 | 4.35e-01 | 97.1% | 68.7% |
| 3186883 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 48.0 | 4.01e-01 | 88.2% | 93.0% |
| 3452899 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.59 | 48.0 | 3.35e-01 | 98.5% | 75.3% |
| 3676128 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.57 | 47.0 | 3.97e-01 | 92.6% | 53.9% |
| 5046929 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 39.0 | 4.27e-01 | 100.0% | 100.0% |
| 3218545 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.56 | 39.0 | 3.69e-01 | 75.0% | 77.6% |
| None | — | 0.55 | 45.0 | 2.96e-01 | 92.6% | 23.8% | |
| 3194063 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.54 | 40.0 | 3.32e-01 | 83.8% | 59.3% |
| 3227147 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.53 | 43.0 | 2.81e-01 | 89.7% | 20.3% |
| 3881192 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 46.0 | 3.46e-01 | 100.0% | 42.4% |
| 3964437 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.52 | 45.0 | 3.91e-01 | 100.0% | 93.6% |
| 4254576 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.50 | 42.0 | 3.80e-01 | 97.1% | 100.0% |