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MN988536.1__QIG74316.1__EVC08_004__00004

Bact-Vir

MN988536.1__QIG74316.1__EVC08_004__00004

Identity

Accession:
MN988536 ↗
Kingdom:
phage

Quality

88.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_N65

TaxID: 2509753

Cluster

View cluster (60 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-51_157-207
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 33.0 3.30e-01 100.0% 43.4%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 33.0 3.12e-01 100.0% 41.0%
4mcwA02 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.63 47.0 3.80e-01 78.0% 83.9%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.62 39.0 3.82e-01 77.0% 56.6%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.61 28.0 2.67e-01 90.0% 36.3%
3mvcB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 42.0 3.64e-01 73.0% 51.3%
2o1eB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.59 50.0 4.44e-01 96.0% 92.1%
6nplA01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.59 49.0 3.16e-01 90.0% 85.7%
4p17A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.59 45.0 4.36e-01 99.0% 73.6%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 46.0 4.05e-01 85.0% 64.2%
2ogwA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.57 48.0 4.33e-01 96.0% 94.6%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 36.0 4.06e-01 77.0% 89.3%
5m9dA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 44.0 3.95e-01 100.0% 62.3%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.54 36.0 3.54e-01 70.0% 61.9%
2pmiB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 44.0 3.52e-01 94.0% 43.2%
2w4sA00 1.10.10.1440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain 0.53 37.0 3.97e-01 79.0% 84.9%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 36.0 3.96e-01 80.0% 89.9%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.51 32.0 3.59e-01 100.0% 85.1%
4axzA00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.50 46.0 3.53e-01 100.0% 51.4%
1tzvA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.50 44.0 3.97e-01 98.0% 76.6%
3ubcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 40.0 3.66e-01 85.0% 91.6%
6khjH01 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.50 43.0 3.03e-01 100.0% 67.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3891489 603.5.1.0 ↗ alpha bundles › STAT-like › FlgN-like › FlgN-like 0.64 35.0 3.28e-01 100.0% 43.3%
4372580 613.1.1.1 ↗ alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.62 45.0 3.56e-01 90.0% 38.5%
4023679 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 46.0 4.23e-01 87.0% 64.6%
4029079 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.58 43.0 3.35e-01 77.0% 92.7%
5082746 604.12.1.143 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF26604 0.56 38.0 4.32e-01 92.0% 92.0%
1935871 171.1.1.0 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.56 49.0 4.00e-01 99.0% 70.6%
3677431 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.56 49.0 3.97e-01 100.0% 88.0%
3274932 6056.1.1.2 ↗ alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.55 40.0 4.25e-01 79.0% 86.7%
4084484 6155.1.1.17 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › LAB_N 0.55 38.0 4.35e-01 93.0% 94.7%
3249883 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.55 47.0 4.36e-01 94.0% 76.0%
3207160 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.54 48.0 4.04e-01 100.0% 72.6%
3547059 106.1.1.10 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › BCD_RFX 0.54 43.0 3.75e-01 87.0% 78.7%
3588370 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.51 46.0 4.29e-01 100.0% 98.4%
3649559 5051.1.1.7 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp 0.51 43.0 2.79e-01 95.0% 78.6%
D2 high residues 52-153
PDB
Domain cluster: rep: NC_023863.2__YP_009021671.1__CHOED_05__00005__D58-166
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24175.3 best SU10_adaptor 32.9 1.30e-07 97.1% 40.5%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.62 46.0 2.91e-01 100.0% 15.5%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.58 38.0 3.95e-01 97.1% 72.3%
2q6iA02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.56 48.0 4.83e-01 97.1% 94.2%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 4.49e-01 97.1% 80.9%
5vqfD01 2.60.120.970 Mainly Beta › Sandwich › Jelly Rolls › 0.56 51.0 3.91e-01 100.0% 85.0%
3pjyA00 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.55 36.0 3.40e-01 98.0% 52.7%
6orhA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 41.0 3.94e-01 100.0% 69.2%
5b6iA02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.54 45.0 4.52e-01 95.1% 93.5%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.54 49.0 3.96e-01 100.0% 74.2%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 4.35e-01 100.0% 87.2%
1cwpA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.53 47.0 4.17e-01 100.0% 89.3%
1p2zA04 2.70.9.10 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 0.52 47.0 3.71e-01 99.0% 100.0%
3sz6A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.62e-01 95.1% 67.2%
1kcvL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 4.17e-01 98.0% 88.3%
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.54e-01 96.1% 65.3%
1vwxI02 3.30.60.300 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.50 21.0 2.92e-01 78.4% 87.5%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957573 11.41.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Baseplate wedge protein gp6 Ig-like domain › Baseplate wedge protein gp6 Ig-like domain 0.79 55.0 6.38e-01 100.0% 98.7%
4957575 1.16.1.0 ↗ beta barrels › cradle loop barrel › Baseplate wedge protein gp6 domain I › Baseplate wedge protein gp6 domain I 0.73 51.0 5.74e-01 99.0% 92.5%
184925 11.21.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › Tailspike_C 0.65 45.0 5.08e-01 99.0% 98.6%
3907235 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.65 58.0 4.50e-01 100.0% 47.6%
3875549 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.64 57.0 4.64e-01 100.0% 53.8%
3945562 1.1.7.111 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › T6SS_TssF 0.63 57.0 5.52e-01 98.0% 94.8%
3258276 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.63 56.0 4.40e-01 100.0% 48.0%
3252861 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.63 56.0 4.45e-01 100.0% 48.8%
5038375 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.63 56.0 4.53e-01 100.0% 51.5%
8624 929.1.1.1 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin › Resistin 0.61 38.0 3.97e-01 100.0% 69.7%
3987869 4261.1.1.1 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.60 36.0 4.18e-01 99.0% 85.7%
3495764 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.60 51.0 4.30e-01 96.1% 64.9%
4027218 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 40.0 4.46e-01 94.1% 88.7%
2883189 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.58 41.0 4.55e-01 100.0% 94.9%
3543655 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.57 51.0 4.01e-01 100.0% 48.2%
4995158 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.57 48.0 4.96e-01 95.1% 100.0%
3879988 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.57 51.0 4.02e-01 100.0% 49.3%
4986214 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.56 46.0 4.77e-01 95.1% 95.8%
4963327 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.56 46.0 4.74e-01 96.1% 96.8%
4956980 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.56 45.0 4.61e-01 95.1% 93.7%
4160121 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 4.50e-01 98.0% 87.8%
4029335 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.55 39.0 4.40e-01 99.0% 100.0%
4972138 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.55 48.0 4.76e-01 97.1% 94.3%
4028543 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.55 39.0 4.36e-01 100.0% 100.0%
4947057 1.1.4.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C 0.54 46.0 4.60e-01 97.1% 93.3%
1277 10.11.1.1 ↗ beta sandwiches › jelly-roll › Thiamin pyrophosphokinase, substrate-binding domain › Thiamin pyrophosphokinase, substrate-binding domain › TPK_B1_binding 0.54 44.0 4.58e-01 96.1% 95.8%
3283109 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.54 46.0 4.54e-01 98.0% 90.9%
3396148 10.2.1.18 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cu2_monooxygen 0.54 48.0 4.09e-01 100.0% 94.1%
5004553 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 46.0 3.88e-01 99.0% 78.3%
4158620 11.1.1.72 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NEAT 0.52 38.0 3.48e-01 95.1% 57.8%
5048738 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 37.0 4.09e-01 99.0% 95.0%
1954233 11.21.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.51 40.0 4.20e-01 95.1% 96.6%
4608778 1.1.7.107 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.51 44.0 4.24e-01 99.0% 81.7%
3204533 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.50 28.0 3.14e-01 70.6% 70.7%
4931041 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.50 38.0 3.70e-01 99.0% 73.0%